Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00536 ATGAACGGAATTCTTGAACATTCAGTGTCAGATATATTTGATTACATTAGAAAGCATGAAGAAAGAGCATTTGTTGTGAAGTTTTCAGCTATTGAGATATACAATGAAGCTGTTAGAGACCTCCTGAGCACAGATACTACTACTCTCAGGCTGCTAGATGACCATGAGCGAGGGACTGTTGTGGAGAAAGTCACTGAGGAAACTTTGAGGGACTGGAACCATTTAAAGGAGCTCATTTCAATGTGTGAAGCTCAACGACGGATTGGAGAGACCTCGCTGAATGAGAAAAGTTCTAGATCTCATCAAATTATTAAATTGACAATTGAAAGTTCTGCTCGAGAGTTTTTAGGAAAAGACAATTCAACCACCCTTGCTGCTAGTGTGAATTTTATTGATTTAGCTGGGAGTGAACGTGCAGCTCAAGCATTATCAGCAGGGGCGAGATTGAAAGAAGGCTGCCACATAAATCGCAGTTTACTGACTCTCGGTACTGTCATTCGCAAATTAAGCAAAGGAAGAAATGGTCATATCAATTACAGAGATTCTAAGCTGACGCGAATATTGCAGCCCTGCTTAGGTGGCAATGCTAGAACAGCCGTCATCTGTACATTGAGCCCTGCTAGAACTCACGTTGAACAAACTAGAAACACTCTCTTGTTTGCTTGTTGTGCAAAAGAGGTGACTACAAAAGCACAAGTCAACGTGGTCATGTCTCAGAAGGCTTTGGTTAAGCATTTGCAGAAAGAGGTAGCCAGATTGGAGAGTGAGTTGAGGACCCCTGCCCCTGTTTCATCCAGTTCTGAATATTCAGCCTTACTTAAAAAGAAAGATCTACAAATAGAGAAGATGGCGAAGGAGATTAGAGAGCTCACAAAGCAAAGGGATCTCGCTCAATCCCGGATTGAAGATTTACTTCGTATGGTTGGGCACGATGATGTCGTGAGAAAGGATATCGAAAGTAGTTATTCCAAATTGCAAGCGAGGGATGCTTTAGAGGATGAAGGTTCACCATCAGAAACTTCAAGTGTGGCTGATTTTCGTGATAGAGATATGGGTGTAAAATCCTTCAACAATCCTCATTATTATGATGGAGACAGTGATGGAAAGAGGTTTCTTGACTCTTACTCCGGTCACAGTCCAATGACAACAACCGCTCTTGCAATAGTCGAAGATTCCGATGACTGCAAGGAAGTTCAATGTATTGAAATGGGGGAGTCAATCAGGGACGATGGCTTGTCACCGCTTGTTGCTAATAACGGTGAATTTAGAGGAAATGGTCATGAAATGACATCAACCCCTGTGAAAGGGAATAGAGAAGCACATCAGATTCAAAATAATTCAGCAAATGATCAACCGGAGCAAAGACTCCATAATGTAAGAAGGACAGAAATTAATTCTATGTTCAGTCCTTACCGCGACCATGCATGTTCAAAGGTGACTGCTGATATGTCAAGCTCCAGAAGCTTGAAGCTAGCCAGAAGCTGGAGTTGTAGAGCCAATCTCTCGACTGATTTATCACCTGGTAGAGGAGAAACCACCCCTCCTCATGGATTTGACCAAAGATTTCCTGGAAGACCTGAAGGTTTTGAACGGAAACTCCCACAATTAGTCTTTGATGACGGCCTCCTGAGGCTTGATTCTCAGTCTTCTATAGGAAGTGCTCGGAGCATCAAAACTTCGGCAGATGAAGACGTTACTCGCTTAGACGCCTTTGTTGCCGGATTGAAGAAAATGACCAACTTAGAGTATGGGAAAGAACTTGCTGATGGACAGTTTCTGAAGGATGGCCACGAATTGGATCTCTTAAAGGCTTCAAATGGTGCTGGAGGGGGAGAGACATTGCAAGATCCTGCACTAGTCACATCCGATTGGAACCAAGAATTTCAGAGGCTGCGGAGGATGATAGTTGAACTTTGGCAAACTTGTAACGTCTCGATAGTCCACAGAACTTACTTTTTCTTGCTCTTCCAAGGTGATCCTACCGATTCCATTTACATGGAAGTGGAGATTAGGAGACTGACTTTTATGAAGCAATCATTTTATTACGGCAATGAAGCTATGGAAGATGGCCGGAAAGTTTCTTTTGCTTCAAGTGTGAGAGATCTTCGTCGTGAGAGAGAAACATTGAGTAAGCTAATGCGGAAACGATTCTCAGAAGAAGAGAGAAAGAGACTATTCCAGCAATGGGGAATCTTGTTGAATTCAAAACGCCGAAGGCTGCAGCTCATCAACTGCTTGTGGAGCGACTCGAAGAACATGAACCATGTAACAGAGAGTGCCGCCATTGTTGCGAAGCTTGTGAAGTTCGCTGAACAAGGACAGGCCCTCAAGGGGAACTTTGGTCTCAGCTTCATCACACCTCCACTGAAAAATAGAAGATCATATAGCTGGAAGAACAGTAGGAGTTCTCTTCCATGA 2418 43.22 MNGILEHSVSDIFDYIRKHEERAFVVKFSAIEIYNEAVRDLLSTDTTTLRLLDDHERGTVVEKVTEETLRDWNHLKELISMCEAQRRIGETSLNEKSSRSHQIIKLTIESSAREFLGKDNSTTLAASVNFIDLAGSERAAQALSAGARLKEGCHINRSLLTLGTVIRKLSKGRNGHINYRDSKLTRILQPCLGGNARTAVICTLSPARTHVEQTRNTLLFACCAKEVTTKAQVNVVMSQKALVKHLQKEVARLESELRTPAPVSSSSEYSALLKKKDLQIEKMAKEIRELTKQRDLAQSRIEDLLRMVGHDDVVRKDIESSYSKLQARDALEDEGSPSETSSVADFRDRDMGVKSFNNPHYYDGDSDGKRFLDSYSGHSPMTTTALAIVEDSDDCKEVQCIEMGESIRDDGLSPLVANNGEFRGNGHEMTSTPVKGNREAHQIQNNSANDQPEQRLHNVRRTEINSMFSPYRDHACSKVTADMSSSRSLKLARSWSCRANLSTDLSPGRGETTPPHGFDQRFPGRPEGFERKLPQLVFDDGLLRLDSQSSIGSARSIKTSADEDVTRLDAFVAGLKKMTNLEYGKELADGQFLKDGHELDLLKASNGAGGGETLQDPALVTSDWNQEFQRLRRMIVELWQTCNVSIVHRTYFFLLFQGDPTDSIYMEVEIRRLTFMKQSFYYGNEAMEDGRKVSFASSVRDLRRERETLSKLMRKRFSEEERKRLFQQWGILLNSKRRRLQLINCLWSDSKNMNHVTESAAIVAKLVKFAEQGQALKGNFGLSFITPPLKNRRSYSWKNSRSSLP 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6933998 6939904 + Carg19384-RA Car19g00536 167503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00536 805 Coils Coil 236 256 - -
Car19g00536 805 MobiDBLite consensus disorder prediction 326 351 - -
Car19g00536 805 MobiDBLite consensus disorder prediction 504 526 - -
Car19g00536 805 ProSiteProfiles Kinesin motor domain profile. 1 227 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car19g00536 805 ProSitePatterns Kinesin motor domain signature. 126 137 IPR019821 GO:0003777|GO:0005524|GO:0007018
Car19g00536 805 Pfam Domain of unknown function (DUF3490) 627 786 IPR021881 -
Car19g00536 805 Coils Coil 273 307 - -
Car19g00536 805 Pfam Kinesin motor domain 2 227 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00536 K11498 CENPE; centromeric protein E - csv:101213783 1332.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00404 Car-Chr12:2574653 Car19g00536 Car-Chr19:6933998 0 dispersed
Car16g00642 Car-Chr16:4079853 Car19g00536 Car-Chr19:6933998 0 dispersed
Car18g00043 Car-Chr18:189065 Car19g00536 Car-Chr19:6933998 1.14E-168 dispersed
Car19g00536 Car-Chr19:6933998 Car12g00552 Car-Chr12:3668374 1.27E-63 dispersed
Car19g00536 Car-Chr19:6933998 Car11g00901 Car-Chr11:5609920 1.08E-99 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g46 Blo02g00649 . . Bda08g00962 . Bpe12g00095 . . Cmo19g00704 . . . . . . Cpe04g00100 Cpe15g00563 Bhi05g01255 . . . . . . Cla02g00484 Cam02g0492 Cec02g0493 Cco02g0498 Clacu02g0496 Cmu02g0491 Cre02g0824 Cone12ag1189 Cone8ag1236 . Cone10ag1095 . Csa07g00039 . Cme01g01338 Blo04g00541 Blo13g00533 Bda15g01063 Bda14g00581 Bpe15g00840 Bpe05g00313 Bma03g00574 . . . . . Cma19g00692 . Car19g00536 . . . . . . . . . . . . . . . . Lsi11g01139 . Chy01g00742 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004297 2 1 3 1 3 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00536 Car_Chr19 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0