Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00541 ATGGCCAAGACTACTGGAAGGATTCCTCTCTCAATAATAGGTACCGTAAATGATATTCCTGTGATCGGTTTAGTCGCTGATTACAAGAATGAAGCTGAAGTTGGCGAGGCTCTAGCAGAAGCTTTTAAGAGTGGACTTGTCAAGAGGGAAGAACTCTTCATCACCACAAAGCTCTGGAATTCAGACCATGGACATGTTCTTGGGGCTTGCAAGGACAGCTTAAAGAAGCTTCAACTAGACTACTTGGATCTGTACCTGGTGCACTTCCCGGTTGCCGTAAAGCATACCGGAGTCGGCAATACTAGCAGTGAATTGGCTGAAGATGGGGTTTTGGACATTGATACGACCATATCCTTAGAGACCACTTGGCATGCCATGGAAGATCTTGTTTCCAATGGTTTAGTTCGCAGCATTGGCATCAGCAATTACGACATCTTTTTAACCAGAGACTGTTTAGCGTATTCGAAAGTGAAGCCTGCTGTGAACCAAATTGAAACACATCCTTACTTTCAACGAGAATCTCTTGTCAAATTTTGCCAGAAACATGGGATTTGTGTCACAGCTCATACTCCTCTGGGGGGTGCTGCTGCTAACCATGAATGGTTTGGTACAGTTTCTTGTCTGGAAGATCCAGTTCTTCAAGGACTCGCCAAGAAACATGGGAAGAGTGCCGCACAAATTGCCCTCAGGTGGGGCATCCAAAGGAAAACCGTCGTGATTCCGAAGACGTCGAAACCCGAGAGATTGGAAGAGAATTTCCAGGTATTTGATTTTGAGCTTGCAAAAGAGGACATGGATCTAATCAATGGAATCGATAGGAAATATCGAACGAACCAACCCGCAAAGTTCTGGGGCATCGATTTATATGCTTAG 873 44.9 MAKTTGRIPLSIIGTVNDIPVIGLVADYKNEAEVGEALAEAFKSGLVKREELFITTKLWNSDHGHVLGACKDSLKKLQLDYLDLYLVHFPVAVKHTGVGNTSSELAEDGVLDIDTTISLETTWHAMEDLVSNGLVRSIGISNYDIFLTRDCLAYSKVKPAVNQIETHPYFQRESLVKFCQKHGICVTAHTPLGGAAANHEWFGTVSCLEDPVLQGLAKKHGKSAAQIALRWGIQRKTVVIPKTSKPERLEENFQVFDFELAKEDMDLINGIDRKYRTNQPAKFWGIDLYA 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6957358 6961120 + Carg19379-RA Car19g00541 167508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00541 290 ProSitePatterns Aldo/keto reductase family signature 2. 126 143 IPR018170 GO:0016491
Car19g00541 290 ProSitePatterns Aldo/keto reductase family putative active site signature. 240 255 IPR018170 GO:0016491
Car19g00541 290 Pfam Aldo/keto reductase family 28 271 IPR023210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00541 - - - csv:101214993 518.079
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00994 Car-Chr7:5655186 Car19g00541 Car-Chr19:6957358 1.67E-43 dispersed
Car16g00175 Car-Chr16:990097 Car19g00541 Car-Chr19:6957358 9.14E-46 dispersed
Car19g00541 Car-Chr19:6957358 Car17g00181 Car-Chr17:1115112 1.87E-14 dispersed
Car19g00541 Car-Chr19:6957358 Car03g00355 Car-Chr3:4460439 1.46E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g53 . . . . . . . . Cmo19g00708 . . . . . Sed05g2284 . Cpe15g00567 Bhi05g01781 Tan02g0747 Cmetu01g1228 . Hepe02g0463 . . Cla02g00479 Cam02g0487 Cec02g0488 Cco02g0493 Clacu02g0490 Cmu02g0485 Cre02g0819 Cone12ag1195 Cone8ag1243 . . . Csa07g00045 . Cme01g01322 . . . . . . . . . . . . Cma19g00699 . Car19g00541 . . . . . . . . . . . . . . . . Lsi11g01144 . Chy01g00736 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002236 1 2 1 1 0 3 1 2 2 2 3 4 1 2 4 1 3 3 1 2 4 2 2 2 3 3 1 3 1 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00541 Car_Chr19 FPKM 5.357004 5.42687 8.044629 6.558215 13.13855 15.12231 12.310725 8.647367 7.802998 6.025542