Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00543 ATGCCCTTGCAGCCCTTGAAATTCGTGACAATGCTTCGAACTTTCCTCTTGGCAATGGGATTCAACGCAAAACGAAGCGATTGCACCATTTATCTAATCATATGCCAAGCATGTCTGAAACTCCCTATGGGAAACCGAACAACAAAGGATAACAAGGCAGTTTCATCAAAGACATCGAAGCTGCCGAGGAAGAAAGTTGGCGAAGATTTGAATAGACAGGCTGCTACCGATGGCACCAAATACAGAACGGACTGGGATGGTCAGGATGTCGGTTTGAACCTGGTTAGTTTCGATGACTCTTCTATGCCAGCACCAGTTTGCTCGTGTACTGGACTTGCAAGGCAGTGCTACAAATGGGGGAATGGAGGTTGGCAATCATCGTGTTGTACCACCCATATGTCCATGTATCCGCTTCCACATATGCCGAATAAACGCCATGTCCGAATGGGCGGGCGGAAAATGAGTGGAAGTGTTTTCACGAAGCTGCTTAGTCGTCTAGCTGCAGCAGGTCACGATCTCTCGGTACCAGTGGATCTTAAGGACCACTGGGCACGACACGGTACAAATCGCTACATAACAATCAGATAG 588 47.96 MPLQPLKFVTMLRTFLLAMGFNAKRSDCTIYLIICQACLKLPMGNRTTKDNKAVSSKTSKLPRKKVGEDLNRQAATDGTKYRTDWDGQDVGLNLVSFDDSSMPAPVCSCTGLARQCYKWGNGGWQSSCCTTHMSMYPLPHMPNKRHVRMGGRKMSGSVFTKLLSRLAAAGHDLSVPVDLKDHWARHGTNRYITIR 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6962433 6965718 + Carg19377-RA Car19g00543 167510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00543 195 MobiDBLite consensus disorder prediction 48 77 - -
Car19g00543 195 Pfam GAGA binding protein-like family 44 195 IPR010409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00543 - - - cmax:111468386 325.865
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00827 Car-Chr15:4712996 Car19g00543 Car-Chr19:6962433 3.34E-38 dispersed
Car12g00396 Car-Chr12:2531359 Car19g00543 Car-Chr19:6962433 2.15E-72 wgd
Car19g00543 Car-Chr19:6962433 Car05g00242 Car-Chr5:1349930 9.32E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g55 . . . . . Bpe12g00098 . . Cmo19g00710 . . . . . Sed11g1487 Cpe04g00095 Cpe15g00568 Bhi05g01776 Tan02g2047 Cmetu03g1142 . . . . Cla02g00476 Cam02g0483 Cec02g0485 Cco02g0490 Clacu02g0486 Cmu02g0481 Cre02g0816 Cone12ag1196 Cone8ag1244 . . . Csa07g00049 . Cme01g01320 . Blo13g00531 Bda15g01061 . . . . Bma08g00777 . . . . Cma19g00701 . Car19g00543 . . . . . . . . . . . . . . . . Lsi11g01148 . Chy01g00732 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car15g00827 CST 384 664 BBR/BPC Transcription factor family AT2G01930 54.7 7.6e-81 297.7
Car04g02085 CST 255 534 BBR/BPC Transcription factor family AT2G01930 53.7 7.1e-79 291.2
Car15g00827 CST 544 664 BBR/BPC Transcription factor family AT2G35550 60.3 7.2e-42 167.9
Car04g02085 CST 425 534 BBR/BPC Transcription factor family AT2G35550 64.5 6.1e-41 164.9
Car12g00396 CCT,ECH 231 345 BBR/BPC Transcription factor family AT2G35550 57.4 1.4e-37 153.7
Car11g00895 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 3.1e-37 152.5
Car05g00242 CCT,ECH 236 345 BBR/BPC Transcription factor family AT2G35550 60.9 4.1e-37 152.1
Car19g00543 . 89 195 BBR/BPC Transcription factor family AT2G35550 58.9 7.0e-37 151.4
Car12g00396 CCT,ECH 239 345 BBR/BPC Transcription factor family AT1G68120 57.9 2.2e-37 153.3
Car11g00895 . 1 313 BBR/BPC Transcription factor family AT2G21240 63.5 1.1e-82 303.9
Car05g00242 CCT,ECH 24 345 BBR/BPC Transcription factor family AT2G21240 51.8 6.7e-64 241.5
Car19g00543 . 45 195 BBR/BPC Transcription factor family AT2G21240 71.5 1.1e-61 234.2
Car11g00895 . 1 313 BBR/BPC Transcription factor family AT4G38910 60.1 4.2e-71 265.4
Car05g00242 CCT,ECH 24 345 BBR/BPC Transcription factor family AT4G38910 51.5 8.2e-59 224.6
Car19g00543 . 64 195 BBR/BPC Transcription factor family AT4G38910 72.7 7.1e-55 211.5
Car12g00396 CCT,ECH 91 345 BBR/BPC Transcription factor family AT5G42520 64.3 5.2e-82 301.6
Car05g00242 CCT,ECH 111 345 BBR/BPC Transcription factor family AT5G42520 58.3 6.0e-78 288.1
Car19g00543 . 82 195 BBR/BPC Transcription factor family AT5G42520 75.9 6.9e-50 194.9
Car15g00827 CST 544 664 BBR/BPC Transcription factor family AT2G35550 60.3 7.2e-42 167.9
Car04g02085 CST 425 534 BBR/BPC Transcription factor family AT2G35550 64.5 6.1e-41 164.9
Car12g00396 CCT,ECH 231 345 BBR/BPC Transcription factor family AT2G35550 57.4 1.4e-37 153.7
Car11g00895 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 3.1e-37 152.5
Car05g00242 CCT,ECH 236 345 BBR/BPC Transcription factor family AT2G35550 60.9 4.1e-37 152.1
Car19g00543 . 89 195 BBR/BPC Transcription factor family AT2G35550 58.9 7.0e-37 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006274 1 3 1 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5280 PF06217 GAGA_bind 7.80E-77 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00543 Car_Chr19 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0