Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00558 ATGGAAAATGGGGTTAAGATTGCTCATGGCTTGGACGATGGAGAGAAGAAATTTGGGGAAGATGGTGTTTCATCGGATTGTGTAGATGAAACAGTTGTACCTGGTGCTCACGAATCTAGGGATTTGGAAGGGGAAGATGTTTTTGAGGAGGCTTTAGATGGGAAAGAGCATTTACTAGAGCAGAGTCCGAGGTATGGTTCGGTGAATGGTGATGTTGGAGAAGAAGAAATCAATGATTTTGTATCTGCGGTAACTTTGGACCACCCTAGTAGTGTTCACGATGAAGAGAAGTTTGAAGAGGCAATGGAGGCTTCTAGTGGGGTCGATGAAAACACGGTGGTAGATGGGCAAGATGTGAATTCTGAAAAGGAGAAGGAAGACTTGGGCGAGAAATTGGTCGACAATGTAGTTGTGGCTTCTAAGATTGATGAAAGAGGAATTAAAGAGGAAGCAGTGAACTCTGAGTTGAATGAGAGGAAGGATAATGAGTTGGACTGCGGTAGAGATGATTCGAGAAAGGAGACATCGGAGAACGGTGCTAGCCCGGAGGTTGAAGTGCTGAAGGGTGGGGATGAGGATGATTTGAAAAACGGTTTGATGAGTATGAAGTCTGAAAATGAAAATAGTGACGTTTTGAATGTGACTCCGCCTTCGAATGATGAACGGGTGAATAAGACTGCCGATATGGTAGGGGGGAGTAACCTGAATTCTTCCAGTGAGATCCCGACTGAGAACAGCAAGGACGTAGAATTGAATGAGAAAAGCTTAGGTACAGAGTCTATAGATCATGTTGAGAACACTGAGAAGCCATTAGTTGCACCCACTGTCCTTGATTTGGACAATCAAGATTATGTGAAGGCTGAGCTAAGGGATGATTCTCTTTGTGTGGATCTAGAACTGCCTGACAATGAGAGTGAAGAAATAAAAACGGCTACGACAGGTATTGATCCTAAGAACAATGATAATAAAGATGAAGAGAGCTCTGAGGAAGTGAAAGATGCTTCTACTGGGAAAGACACAGAAGTGCGGTCGAGAGAATCTCGGGGATTAAATGGCACTACTTCTGTTGATCAACATGAACCTGTGGGTGAAAATCGAATTTCTCTGGAGACGGTTAAGGATATCTCAGCTTCTGAAAAGATAGCAGATGAGAAAGTTGAGAAGGCCCAGGGTGGTGAAAGTGATGTGACTGTGAAGGAAGATAATACATTAAGACAACAGCATCCTGTCGATAGTTCCAATAATGGCCTCGACACGGGAGGGCTTGAAAAGACGGAGAGTAAAGATAAGGTTGGACAGGACAGAACCCAAGTGAAAAGGGATCCAGAGATTCAACCTTCATCAATCATTGCTTCATCATCCGGAAAATCTACAAATCCCACTCCTCCTGCCCATCCAGCTGGTCTTGGGCGGGCTGCTCCATTGTTGGAACCTGCCCCTCGGGTGGTGCAGCCACCTCGAGTAAACGGTACTGTATCTCATGTTCAAATGCAACAAATTGATGATCATGTTAATGGGGATGCTGAGGAAAATGACGATACTCGTGAGCAACTCCAGATGATAAGAGTGAAATTTTTGCGTCTTGCACATAGACTTGGGCAAACTCCACACAATGTTGTTGTGGCACAAGTTCTATACCGACTTGGATTAGCTGAGCAACTTCGAGGAAGAAATGGAGGTCGGGTTGGTGCCTTCAGCTTTGACCGTGCCAGTGCCATGGCAGAGCAGCTGGAGGCTGCTGGGCAGGAACCACTTGATTTTTCTTGTACGATCATGGTTCTTGGAAAGACAGGCGTGGGTAAAAGCGCTACCATCAACTCCATATTCGATGAAGTTAAATTCAGTACTGATGCTTTTCAAATGGGCACAAAAAAGGTTCAAGATGTTGTGGGAACTGTGCAGGGGATCAAAGTACGGGTCATCGACACTCCTGGTCTTCTTACCTCTTGGTCAGACCAGCGCCAGAATGAGAAGATCCTTCTCTCTGTAAAAAATTTTATAAAGAAGACGCCTCCAGATATTGTTTTGTATCTTGATAGGCTGGACATGCAAAGCCGAGATTTCAGTGACATGCCTCTCTTGCGTACAATTACTGAAATATTTGGACCATCTATATGGTTCAACGCAATTGTAGTTCTTACTCATGCAGCATCTGCTCCACCTGATGGTCCAAATGGCACTGCTTCTAGTTACGATATGTTCGTCACTCAGCGATCTCATGTTGTACAGCAAGCCATACGCCAGGCTGCAGGGGATATGCGTCTTATGAATCCCGTCTCATTAGTGGAGAATCACTCTGCTTGCAGAACGAACAGAGCTGGGCAAAGGGTATTGCCAAATGGCCAGGTTTGGAAACCTCATTTGTTATTGCTCTCTTTTGCCTCGAAGATTTTGGCCGAAGCTAACACTCTTCTGAAGTTGCAAGATAGTCCTCCTGGGAGGCCATTTACTCCTCGGTCGAAGTCACCTCCTTTACCATTTCTTCTTTCTTCCCTTCTTCAATCCAGACCTCAAGTGAAACTGCCAGAGGAACAATTTGCTGATGATGATGGTCTTGAGGATGACCTTGATGAATCGTCAGATTCCGAAAATGAATCTGAATATGATGAATTGCCACCTTTTAAACGATTGAAAAAAGCACAGGTGGAGAAGCTCTCCAAAGAACAGAAGAAGGCCTACTTTGACGAGTTGGAATACAGGGAAAAACTTTTTATGAAGAAGCAACTAAAAGAAGAGAAAATGAGGAGGAAGATGTTGAAGAAAATGGCTGCCGAGGCAAAAGATCGACCTAGCAACTCTAGTGATAATGTAGAAGAAGATAGTGGTGCTGCTGCATCAGTACCAGTTCCCATGCCTGATTTGGCGTTACCTGCTTCCTTTGATTCTGATAATCCCACTCACCGGTATCGTTATCTCGATTCCTCTAACCAGTGGCTAATAAGGCCTGTACTCGAAACACATGGATGGGATCATGATGTTGGTTATGAAGGTATAAATGCAGAGAAGTTGTTCGTCGTCAAAGACACAATACCCATCTCTTTTAGTGGTCAAGTTACCAAGGATAAGAAGGATGCAAATGTTCAAATCGAGATGAGTAGTACGATAAAGCATGGCGAAACTAAAGCGTCTTCTATCGGTTTTGATATGCAGACTGTTGGGAAGGATTTGGCCTATACATTACGTGGTGAGACAACATTTATTAATTTTAGAAAGAACAAGGCAATTGCTGGTCTGTCATTTGCCCTATTAGGGGATGCCTTGTCTGCAGGATTCAAAGTTGAAGATAAATTGATTGCTAATAAGCGATTTCGTTTAGTTGTGACTGGGGGTGCTATGACTGGTAGGGGAGATGTAGCTTATGGTGGCAGCCTGGAGGCTCAATTGAGAGATAAAGATTATCCGTTGGGTCGTTCCCTTTCGACTCTTGGGCTCTCAGTTATGGATTGGCATGGAGATCTTGCTATTGGTTGCAACATACAATCTCAAGTTCCCATTGGACGATCGACAAACCTAATTGGTCGTATGAATTTGAATAACAGGGGGGCAGGGCAAGTCAGTGTTCGGTTAAACAGCTCGGAACAGCTTCAGTTAGCTCTTGTTGGTCTCCTTCCTCTATTCAGAAAGCTTCTGGGTTGTTATCAACACTGGCAGGATGAACAATGA 3663 44.23 MENGVKIAHGLDDGEKKFGEDGVSSDCVDETVVPGAHESRDLEGEDVFEEALDGKEHLLEQSPRYGSVNGDVGEEEINDFVSAVTLDHPSSVHDEEKFEEAMEASSGVDENTVVDGQDVNSEKEKEDLGEKLVDNVVVASKIDERGIKEEAVNSELNERKDNELDCGRDDSRKETSENGASPEVEVLKGGDEDDLKNGLMSMKSENENSDVLNVTPPSNDERVNKTADMVGGSNLNSSSEIPTENSKDVELNEKSLGTESIDHVENTEKPLVAPTVLDLDNQDYVKAELRDDSLCVDLELPDNESEEIKTATTGIDPKNNDNKDEESSEEVKDASTGKDTEVRSRESRGLNGTTSVDQHEPVGENRISLETVKDISASEKIADEKVEKAQGGESDVTVKEDNTLRQQHPVDSSNNGLDTGGLEKTESKDKVGQDRTQVKRDPEIQPSSIIASSSGKSTNPTPPAHPAGLGRAAPLLEPAPRVVQPPRVNGTVSHVQMQQIDDHVNGDAEENDDTREQLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAFSFDRASAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFSTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLTSWSDQRQNEKILLSVKNFIKKTPPDIVLYLDRLDMQSRDFSDMPLLRTITEIFGPSIWFNAIVVLTHAASAPPDGPNGTASSYDMFVTQRSHVVQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANTLLKLQDSPPGRPFTPRSKSPPLPFLLSSLLQSRPQVKLPEEQFADDDGLEDDLDESSDSENESEYDELPPFKRLKKAQVEKLSKEQKKAYFDELEYREKLFMKKQLKEEKMRRKMLKKMAAEAKDRPSNSSDNVEEDSGAAASVPVPMPDLALPASFDSDNPTHRYRYLDSSNQWLIRPVLETHGWDHDVGYEGINAEKLFVVKDTIPISFSGQVTKDKKDANVQIEMSSTIKHGETKASSIGFDMQTVGKDLAYTLRGETTFINFRKNKAIAGLSFALLGDALSAGFKVEDKLIANKRFRLVVTGGAMTGRGDVAYGGSLEAQLRDKDYPLGRSLSTLGLSVMDWHGDLAIGCNIQSQVPIGRSTNLIGRMNLNNRGAGQVSVRLNSSEQLQLALVGLLPLFRKLLGCYQHWQDEQ 1220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7104072 7107734 - Carg19361-RA Car19g00558 167525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00558 1220 MobiDBLite consensus disorder prediction 201 222 - -
Car19g00558 1220 MobiDBLite consensus disorder prediction 407 421 - -
Car19g00558 1220 MobiDBLite consensus disorder prediction 186 200 - -
Car19g00558 1220 MobiDBLite consensus disorder prediction 923 947 - -
Car19g00558 1220 MobiDBLite consensus disorder prediction 843 874 - -
Car19g00558 1220 MobiDBLite consensus disorder prediction 442 461 - -
Car19g00558 1220 ProSiteProfiles AIG1-type G domain profile. 586 815 IPR006703 GO:0005525
Car19g00558 1220 MobiDBLite consensus disorder prediction 291 472 - -
Car19g00558 1220 MobiDBLite consensus disorder prediction 1 27 - -
Car19g00558 1220 Coils Coil 909 929 - -
Car19g00558 1220 MobiDBLite consensus disorder prediction 229 245 - -
Car19g00558 1220 MobiDBLite consensus disorder prediction 847 867 - -
Car19g00558 1220 MobiDBLite consensus disorder prediction 116 130 - -
Car19g00558 1220 MobiDBLite consensus disorder prediction 318 346 - -
Car19g00558 1220 MobiDBLite consensus disorder prediction 347 361 - -
Car19g00558 1220 MobiDBLite consensus disorder prediction 99 130 - -
Car19g00558 1220 MobiDBLite consensus disorder prediction 376 406 - -
Car19g00558 1220 MobiDBLite consensus disorder prediction 422 441 - -
Car19g00558 1220 MobiDBLite consensus disorder prediction 1 24 - -
Car19g00558 1220 MobiDBLite consensus disorder prediction 143 179 - -
Car19g00558 1220 MobiDBLite consensus disorder prediction 291 311 - -
Car19g00558 1220 Pfam AIG1 family 589 722 IPR006703 GO:0005525
Car19g00558 1220 MobiDBLite consensus disorder prediction 143 249 - -
Car19g00558 1220 Pfam Translocase of chloroplast 159/132, membrane anchor domain 947 1210 IPR024283 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00558 - - - csv:101205042 1946.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00290 Car-Chr1:1606680 Car19g00558 Car-Chr19:7104072 0 dispersed
Car05g01189 Car-Chr5:11250792 Car19g00558 Car-Chr19:7104072 4.19E-177 dispersed
Car12g01160 Car-Chr12:11166832 Car19g00558 Car-Chr19:7104072 4.76E-174 dispersed
Car16g00618 Car-Chr16:3957083 Car19g00558 Car-Chr19:7104072 0 dispersed
Car16g01166 Car-Chr16:9927987 Car19g00558 Car-Chr19:7104072 1.00E-35 dispersed
Car19g00558 Car-Chr19:7104072 Car14g00816 Car-Chr14:4786970 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g129 . . . . . Bpe12g00112 . . Cmo19g00737 . . . . . Sed08g0469 . Cpe15g00583 Bhi05g01734 Tan02g0702 Cmetu06g1183 . Hepe02g0438 . . Cla02g00439 Cam02g0448 Cec02g0446 Cco02g0466 Clacu02g0450 Cmu02g0444 Cre02g0778 Cone2ag0203 Cone16ag0840 . . . Csa07g00087 . Cme01g01277 Blo04g00558 Blo13g00521 . Bda14g00607 Bpe15g00822 . Bma03g00599 Bma08g00616 . . . Cma11g01385 Cma19g00728 . Car19g00558 . . . . . . . . . . . . . . . . Lsi11g01187 . Chy01g00691 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005811 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00558 Car_Chr19 FPKM 6.596687 7.750522 6.308415 6.041945 12.388773 12.897248 10.992807 4.734106 5.051247 4.712471