Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00563 CGCGTGGCGGTTCATGGCCAAAGGATGAGCTTTGGAGGTCGCATTATCAAATTGGGAGCAGATTTTTGCGAAGTTCGAGGTATGCACTTGACTTTTCTTCTCTCGTCTGCTAACTATAATATCCAATCCCATCGTTTCTTCATCTTCTTCTTCTTCATCAGGTATCCTCTCTACTGTACGAAGCAACGCCTTTCGTTTTGCTGCTCTGTAATGGCGTTACCGGTCGTAGATACAGAGTACCTTAAGGAGATCGATAAGGCTCGCCGTCACCTCCGCTCTCTCATTGCCAACCGGAACTGTGCACCGATCATGCTTCGTCTGGCTTGGCACGACGCTGGCACGTACGATGTGAGTACGAAAACTGGAGGGCCTAATGGTTCGATTAGGAACGCGGAGGAGTATTCTCACGGGTCTAACAATGGACTGAAAAAAGCTATTGATTTTTGTGAGGAAGTGAAGTATAAACATCCGAAGATTACTTATGCAGACCTGTACCAGCTAGCTGGTGTTGTTGCTGTCGAGGTCACTGGAGGCCCGACTATTGACTTTGTTCCTGGTAGAAAGGATTCGAACATTTGTCCCAGGGAAGGCCGACTTCCTGATGCTAAAAAAGGTGCACCGCATCTGCGTGACATCTTTTATAGGATGGGTCTGTCTGACAAAGATATTGTTGCATTGTCTGGGGGTCACACTTTGGGAAGAGCACATCCGGAGAGATCTGGTTTTGATGGACCTTGGACAGAGGATCCTCTGAAGTTTGATAACTCATACTTTGTGGAACTGTTGAAAGGTGAATCAGAGGGACTATTAAAACTTCCCACGGACAAGGCTTTACTTGAAGATCCTGAATTCCGCCAATATGTGGAATTGTATGCAAAAGATGAAGATGTATTCTTCCAAGATTATGCTGAATCACACAAGAAACTTTCAGAGCTAGGGTTCACTCCAGGTTCTGCTAAACCAATTGTGAAGGACAGCACAGTATTGGCTCAGGGTGCCGTTGGAGCCGCGGTTGCAGCTGCTGTGGTAATTCTGAGCTACTTATACGAAATTCGCAAAAAATCGAAGTAA 1071 46.13 RVAVHGQRMSFGGRIIKLGADFCEVRGMHLTFLLSSANYNIQSHRFFIFFFFIRYPLYCTKQRLSFCCSVMALPVVDTEYLKEIDKARRHLRSLIANRNCAPIMLRLAWHDAGTYDVSTKTGGPNGSIRNAEEYSHGSNNGLKKAIDFCEEVKYKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNICPREGRLPDAKKGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTEDPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPEFRQYVELYAKDEDVFFQDYAESHKKLSELGFTPGSAKPIVKDSTVLAQGAVGAAVAAAVVILSYLYEIRKKSK 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7133168 7137095 - Carg19356-RA Car19g00563 167530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00563 356 ProSitePatterns Peroxidases active site signature. 101 112 IPR019794 GO:0004601
Car19g00563 356 ProSiteProfiles Plant heme peroxidase family profile. 101 330 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car19g00563 356 ProSitePatterns Peroxidases proximal heme-ligand signature. 222 232 IPR019793 -
Car19g00563 356 Pfam Peroxidase 90 294 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00563 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - csv:101206941 528.094
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00618 Car-Chr3:5677709 Car19g00563 Car-Chr19:7133168 1.76E-136 dispersed
Car16g00613 Car-Chr16:3920485 Car19g00563 Car-Chr19:7133168 0 dispersed
Car19g00563 Car-Chr19:7133168 Car20g00395 Car-Chr20:2212739 1.80E-92 dispersed
Car19g00563 Car-Chr19:7133168 Car01g00506 Car-Chr1:2978070 4.31E-116 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g152 . . . . . . . . Cmo19g00742 . . . . . Sed05g2222 . Cpe15g00587 Bhi05g01726 Tan02g0695 Cmetu01g1029 . Hepe02g0430 . . . . . . . . . Cone12ag1229 Cone8ag1280 . . . Csa07g00093 . Cme01g01269 Blo04g00564 . . Bda14g00613 Bpe15g00817 . Bma03g00605 . . . . . . . Car19g00563 . . . . . . . . . . . . . . . . Lsi11g01196 . Chy01g00685 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002255 2 2 2 1 2 2 3 2 2 2 1 2 1 2 2 3 2 4 3 2 2 2 2 2 2 1 2 3 4 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00563 Car_Chr19 FPKM 3.424311 3.997271 10.423962 9.927084 16.251602 14.908687 16.147448 13.055491 12.059518 12.74569