Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00568 ATGGCTGAAGAACAAGCCGGCGGTGTCGATGAGGTGGTGGAGGAATTCGCCATCTGGAAGAAGAACTCTCCCTATCTGTATGATGTTCTCATTTCCCACTCACTGGAATGGCCATCTCTCACCGTCGATTGGGTTCAATCGGCACCATTTCCTCACCAGGCCAACCCATCTCTTGCCGTCCACAAGCTTGTCCTCGGAACCCACACATCGGAGGACGCCCCCAATTACCTCATGGTGGCGGATTCTATTCTTCCGGTCAAAGCATCCGAAACCAGAATCGACATTAGTAGGGAAAATCCTATTATGCCGAAGATAGAGATAACCCAGAAGATACGTGTTGAAGGGGAGGTGAACAGAGCGCGGTGCATGCCGCAGAACCCACAAATTGTTGGTGCAAAAACGAGTGGATGTGAGGTGTATGTTTTTAATTGTGCTAAACAAGGGGCAAAGGCTCAGGGAGATGAGTGCGACCCTGATTTGAGATTGAGGGGTCATGATAAGGAGGGTTATGGGTTATCTTGGAGTCCGTTTAAGGAGGGTTACCTCTTAAGTGGCTCAAATGATCAGAAAATCTGTTTGTGGGATGTGTCTTCCATGGCTGACAAGAATGTGCTTGATGCAATGCACGTTTATGAGGCTCATGAAAGCGTGGTCGGGGATGTGTCATGGCATTTGAAGAATGAGAATTTGTTTGGATCTGTAGGCGATGATTGCTTGTTGGTGATATGGGATTTGCGTACAAATAAATCAGTGGATTCTGTTCGAGCTCACGAGGAGGAGGTGAACTATGTTTCTTTCAATCCTTATAACGAATGGATTGTAGCAACGGCATCCTCAGATACCACAGTGGGTCTGTTTGATCTCCGAAAGCTCGCCGAACCACTGCACGTTCTTAGCAGCCATGCGGAGGGAGTGTTTCAGGTGGAGTGGGATCCAAATCATGAAACTGTGTTGGCATCTTCTGGTGACGATAGAAGGTTAATGGTGTGGGATCTAAACAGCATAGGAAGCGAGCAAGATGGAGAGGCTGAAGATGGGCCTCCAGAGCTGTTGTTTTCACATGGAGGTCACAAGGCTAAAATCTCAGACTTCAGCTGGAACACCCACGAGCCATGGGTCATTTCAAGTGTGGCTGAAGATAACTCAGTACAGGTCTGGCAAATGGCCAAAAGTATCTACCGATGA 1185 48.02 MAEEQAGGVDEVVEEFAIWKKNSPYLYDVLISHSLEWPSLTVDWVQSAPFPHQANPSLAVHKLVLGTHTSEDAPNYLMVADSILPVKASETRIDISRENPIMPKIEITQKIRVEGEVNRARCMPQNPQIVGAKTSGCEVYVFNCAKQGAKAQGDECDPDLRLRGHDKEGYGLSWSPFKEGYLLSGSNDQKICLWDVSSMADKNVLDAMHVYEAHESVVGDVSWHLKNENLFGSVGDDCLLVIWDLRTNKSVDSVRAHEEEVNYVSFNPYNEWIVATASSDTTVGLFDLRKLAEPLHVLSSHAEGVFQVEWDPNHETVLASSGDDRRLMVWDLNSIGSEQDGEAEDGPPELLFSHGGHKAKISDFSWNTHEPWVISSVAEDNSVQVWQMAKSIYR 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7160701 7163328 - Carg19351-RA Car19g00568 167535

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00568 394 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 14 82 IPR022052 -
Car19g00568 394 ProSitePatterns Trp-Asp (WD) repeats signature. 318 332 IPR019775 -
Car19g00568 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 298 334 IPR001680 GO:0005515
Car19g00568 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 354 394 IPR001680 GO:0005515
Car19g00568 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 162 204 IPR001680 GO:0005515
Car19g00568 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 254 289 IPR001680 GO:0005515
Car19g00568 394 Pfam WD domain, G-beta repeat 251 287 IPR001680 GO:0005515
Car19g00568 394 Pfam WD domain, G-beta repeat 208 244 IPR001680 GO:0005515
Car19g00568 394 Pfam WD domain, G-beta repeat 351 386 IPR001680 GO:0005515
Car19g00568 394 Pfam WD domain, G-beta repeat 293 331 IPR001680 GO:0005515
Car19g00568 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 298 334 - -
Car19g00568 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 162 198 - -
Car19g00568 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 211 253 IPR001680 GO:0005515
Car19g00568 394 ProSitePatterns Trp-Asp (WD) repeats signature. 182 196 IPR019775 -
Car19g00568 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 354 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00568 K10752 RBBP4, HAT2, CAF1, MIS16; histone-binding protein RBBP4 - csv:101207920 759.214
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00217 Car-Chr1:1175582 Car19g00568 Car-Chr19:7160701 6.42E-06 dispersed
Car06g01016 Car-Chr6:7705161 Car19g00568 Car-Chr19:7160701 8.77E-157 dispersed
Car07g00155 Car-Chr7:914411 Car19g00568 Car-Chr19:7160701 7.83E-09 dispersed
Car11g00571 Car-Chr11:3079777 Car19g00568 Car-Chr19:7160701 1.53E-35 dispersed
Car11g00575 Car-Chr11:3115945 Car19g00568 Car-Chr19:7160701 2.20E-60 dispersed
Car14g00892 Car-Chr14:5309537 Car19g00568 Car-Chr19:7160701 1.57E-11 dispersed
Car19g00568 Car-Chr19:7160701 Car03g00855 Car-Chr3:6886634 1.47E-12 dispersed
Car10g00647 Car-Chr10:3297287 Car19g00568 Car-Chr19:7160701 7.57E-60 transposed
Car16g00621 Car-Chr16:3970677 Car19g00568 Car-Chr19:7160701 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g163 . . . . . . . . Cmo19g00748 Cmo11g01740 . . . . Sed06g0381 Cpe04g00592 . Bhi05g01715 Tan02g0682 Cmetu01g1199 . Hepe02g0425 . . Cla02g00427 Cam02g0436 Cec02g0434 Cco02g0452 Clacu02g0437 Cmu02g0432 Cre02g0766 Cone12ag1232 . . . . Csa07g00100 . Cme01g01262 Blo04g00567 . . . Bpe15g00813 . Bma03g00609 . . . . Cma11g01381 Cma19g00739 . Car19g00568 . . . . . . . . . . . . . . . . Lsi11g01200 . Chy01g00681 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010062 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00568 Car_Chr19 FPKM 5.535445 6.37208 2.485307 4.066866 2.699038 2.87688 2.379703 0.291805 0.721723 1.219983