Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00572 ATGGCGAAGCCGGTTCAAATTGAAGTGTGGAATCCTAATGGAAAGTACAGAGTTGTAAGCACCAAGCCTATGCCTGGAACTCGCTGGATCAATCTCTTGATCGAACAAGATTGCCGAGTTGAAATTTGTACCGAGAAGAAGACGATACTCTCGGTGGAGGATATTGTTGCTCTCATCGGCGATAAGTGCGACGGCGTTATTGGACAGTTGACTGAAGATTGGGGAGAGGTGCTGTTTTCTGCATTAAGCAGAGCCGGAGGCAAAGCTTTTAGTAATATGGCTGTTGGTTACAATAATGTAGATGTTAACGCGGCTAATAAGTATGGTATTGCTGTAGGAAACACTCCTGGAGTACTTACAGAAACTACAGCAGAGTTGGCCGCTTCACTTTCTCTTGCAGCTGCAAGAAGGATCGTTGAAGCTGACGAGTTCATGAGGGCAGGCCGCTATGATGGATGGCTTCCGAATTTGTTTGTTGGAAACTTGCTGAAAGGCCAGACTGTTGGTGTGATTGGAGCTGGTCGTATTGGATCTGCTTATGCAAGAATGATGGAAATTTTCCTAACTCAATTGTTTATGAGTTTATGGTATAGTACCTGTTTTCCCTTGATGATTTCTTGTTATATTCTTGCAGCCTATGGCGAGTTCCTAAAAGCCAACGGTGAGGTTCCTGTGACATGGAGAAGAGCATCATCCATGGATGAGGTGCTTCGAGAGGCTGATGTGATAAGTCTTCATCCAGTACTGGATAAAACCACCTTCCATCTGGTGAACAAAGAAAGTCTTAAAGCCATGAAGAAGGATGCAATCCTCATTAACTGTAGTAGGGGACCCGTGATCGATGAAGCAGCCCTTGTCGAGCATTTAAAAGAGAATCCGATGTTTCGAGTTGGCCTCGATGTCTTCGAGGATGAACCATACATGAAACCTGGGCTTGCTGATATGAAGAATGCGATCATTGTTCCTCACATTGCTTCCGCTTCCAAGTGGACTCGTGAAGGGATGGCGACACTGGCTGCTCTTAATGTTCTGGGAAAAATTAAACAATATCCCGTTTGGGCCGATCCGAACCGAGTAGAACCATTCCTTGATGAGAACGCTCCACCTCCAGCTGCGTCTCCGAGCATTGTGAATGCAAAAGCCTTGGGTATATAA 1155 45.45 MAKPVQIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDIVALIGDKCDGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMEIFLTQLFMSLWYSTCFPLMISCYILAAYGEFLKANGEVPVTWRRASSMDEVLREADVISLHPVLDKTTFHLVNKESLKAMKKDAILINCSRGPVIDEAALVEHLKENPMFRVGLDVFEDEPYMKPGLADMKNAIIVPHIASASKWTREGMATLAALNVLGKIKQYPVWADPNRVEPFLDENAPPPAASPSIVNAKALGI 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7188124 7191110 + Carg19347-RA Car19g00572 167539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00572 384 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 265 281 IPR029753 -
Car19g00572 384 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 31 345 IPR006139 GO:0016616|GO:0051287
Car19g00572 384 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 130 189 IPR006140 GO:0051287
Car19g00572 384 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 229 325 IPR006140 GO:0051287
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00572 K15893 HPR1; glycerate dehydrogenase [EC:1.1.1.29] - csv:101209132 672.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00739 Car-Chr17:6635130 Car19g00572 Car-Chr19:7188124 3.49E-32 dispersed
Car19g00572 Car-Chr19:7188124 Car06g00956 Car-Chr6:7360341 3.88E-13 dispersed
Car16g00625 Car-Chr16:3994663 Car19g00572 Car-Chr19:7188124 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g171 . . . . . . . . Cmo19g00752 . . . . . . . Cpe15g00597 . . . . . . . . . . . . . . . Cone8ag1289 . . . Csa07g00106 . . . . . . . . . . . . . Cma11g01377 Cma19g00743 . Car19g00572 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010312 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00572 Car_Chr19 FPKM 1.799289 1.841779 2.495463 2.870428 4.445703 3.658263 4.193866 2.128355 2.029417 2.300045