Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00580 ATGGAAAATGTGGTTGATGTTCTGATTGTGGGAGCTGGAATCAGTGGTCTCACTACTGCATTGGGACTTCACAGATTGGGTATTCGAAGCTTGGTTTTGGAGTCGTCGGATGATTTGAGGATCACTGGGTTTGCGTTATCGTTATGGACGAACGGCTGGAAGGCGTTGGATGCAGTTGGAATTGGCGATTCACTTCGCCAAATCCATGACCAACTTGAAGGGATTATAACTACATCAATGATTTCTGGGCGTAAAACTTCAGAGCTGTTGTTTTCGGCTCCCGAAGAACGTGGAGTTCGCTGTGTCAGAAGAAAGTTCTTGCTAGAATTTCTGGCCAAGGAACTTCCCATTGGAACCATCAAATTCTCCTCCAAGGTGGTTTCCATTGAGGAGTCTGGTTTGCTTAAACTTGTGCATCTTGCTGATGGAACCTCAATCAAGACCAAGGTGCTAATAGGATGTGATGGAGTGAACTCGGTGGTGGCAAAATGGCTAGGCTTCAAGGCACCAGCTTTCACAGGGAGATATGCTGTAAGAGGCTGTTTAGAACTCAAGTCCAGCCATGGTTTTGAACCAAAGATGAGCCAATTTGTCGGTGAGGGAGTACGAGCTGGTATCATCCCGTGCAATGACAAGACTCTTTATTGGTTTTTCACTTGGACCCCCTCAGCTGAAGAGATTGAAATGAGTGAAAATCCAGCAAAACTGAAGCAACTTGTACTAAGCAAGCTTGGAGAGATGCCAGGAGAAGCAAGGGCAGTGATTGAAGAAACTGATGCAATGTGTGTGTGGCTGGTGATGCGCTGCACCAATGAGACCCCAGACCTCGGCCAGGTGGGTGTTCTGCTTTTGGAAGATGGGGTTGTTTTAGCCAGATGCATTGCAGAAGCCCTGCTGAAAAAACCCAGCAGCCCTGAGGAGGAGGTCCTGCTGCTCGAGATGGGGCTTAGGAAGTACGCTGCCGAGAGGAAATGGCGGAGCATCGACCTGATCGGCACAGCATATATGGTGGGAAGGCTGCAACAGAGCAGTGGGGTGTTTGCGAAGTTCTTCAGGGATAAGATTTTGTCTCACTTTCTGGTTGGCCTCTTGCTGGGAAGAACAAACTTTGACTGCGGGAAACTGGACCCTTCTTCTTTGTAG 1143 48.29 MENVVDVLIVGAGISGLTTALGLHRLGIRSLVLESSDDLRITGFALSLWTNGWKALDAVGIGDSLRQIHDQLEGIITTSMISGRKTSELLFSAPEERGVRCVRRKFLLEFLAKELPIGTIKFSSKVVSIEESGLLKLVHLADGTSIKTKVLIGCDGVNSVVAKWLGFKAPAFTGRYAVRGCLELKSSHGFEPKMSQFVGEGVRAGIIPCNDKTLYWFFTWTPSAEEIEMSENPAKLKQLVLSKLGEMPGEARAVIEETDAMCVWLVMRCTNETPDLGQVGVLLLEDGVVLARCIAEALLKKPSSPEEEVLLLEMGLRKYAAERKWRSIDLIGTAYMVGRLQQSSGVFAKFFRDKILSHFLVGLLLGRTNFDCGKLDPSSL 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7239626 7242534 - Carg25765-RA Car19g00580 167547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00580 380 Pfam FAD binding domain 5 249 IPR002938 GO:0071949
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00580 - - - csv:101206459 571.237
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car19g00577 Car-Chr19:7214691 Car19g00580 Car-Chr19:7239626 8.41E-133 dispersed
Car19g00578 Car-Chr19:7235101 Car19g00580 Car-Chr19:7239626 3.44E-46 dispersed
Car19g00579 Car-Chr19:7237818 Car19g00580 Car-Chr19:7239626 1.57E-34 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g182 . . . . . . . . Cmo19g00760 . . . . . Sed05g2244 . Cpe15g00603 Bhi05g01692 Tan02g0662 Cmetu01g1510 . . . . Cla02g00413 Cam02g0423 Cec02g0421 Cco02g0439 Clacu02g0424 Cmu02g0419 Cre02g0753 . Cone8ag1297 . . . Csa07g00114 . Cme01g01245 Blo04g00581 . . . . . . . . . . . . . Car19g00580 . . . . . . . . . . . . . . . . . . Chy01g00669 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001099 3 2 7 1 2 3 4 2 2 3 2 2 0 4 2 3 2 5 2 2 2 2 1 2 2 1 2 4 2 7 78
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00580 Car_Chr19 FPKM 13.504278 12.378721 20.411634 19.211926 22.12075 19.312283 22.560513 16.111395 17.567259 19.304647