Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00582 ATGAAGTCTGGAGACAAACATCGTAGTCGAAGTTCAAAGTATAAGACTGATGGTAAAGATGATGGGGAACATAGGTCAAAGCGTTCAAAATCAGAAGATGAGTCACTTGATCATGATCGACATAGAGATAGGACTTCTTCCCGGCACCGGTCTAGGTCCAGAGATAGAGACCGTGATCGGCATAGTAGTGGTAAAGAGTTTAGGGGAAAAGAGGACAGAGAAAAGAATCAGGAAGAGAGGAGCAGTAAGGACAGAGATGTGGACAGAGATAAAGAACGTGTGCACGATCATGATAGACGAGGCAGAGATGGTGAAAAGGACAGGGAAAGAGAACGGTCACATCGAAGTAGAAGTCATTCAGAAAGACATCGCAGTGATCGAGATGAAAGCATTAGACAGAGGACCCGAGATAATGAATTCAGAGAACGAGAAAAAGAGAGAGAGTCTAGAGAGCGAGGCAGGGATGGCAGAAGACATAAGGAGAAAAAGGAAGACGGAACAGAACCAGAAGCTGATCCTGAAAGGGATCAGAGGACTGTATTTGCCTATCAGATAAGTTTGAAGGCAACTGAAAGAGATGTGTTCGAATTCTTCTCCAGGGCCGGTAAGGTGTTGGGGAAGGTGGTTTTCTCAAGACAGGTGCGAGATGTACGCCTCATCATGGATCGTAATTCAAGACGTTCTAAAGGCGTTGGGTAA 699 45.21 MKSGDKHRSRSSKYKTDGKDDGEHRSKRSKSEDESLDHDRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDRDKERVHDHDRRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFREREKERESRERGRDGRRHKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVLGKVVFSRQVRDVRLIMDRNSRRSKGVG 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7250317 7254344 - Carg25763-RA Car19g00582 167549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00582 232 MobiDBLite consensus disorder prediction 1 177 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00582 K13091 RBM23_39; RNA-binding protein 23/39 - csv:101209872 240.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00764 Car-Chr7:3972519 Car19g00582 Car-Chr19:7250317 2.80E-26 dispersed
Car19g00582 Car-Chr19:7250317 Car03g00958 Car-Chr3:7440441 1.20E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g183 . . . Bda08g00985 . . Bma05g00377 . . . . . . . Sed05g2245 . . Bhi05g01691 Tan02g0661 Cmetu01g1207 . Hepe02g0413 . . Cla02g00412 Cam02g0421 Cec02g0420 Cco02g0438 Clacu02g0423 Cmu02g0418 Cre02g0752 Cone12ag1242 Cone8ag1298 . . . Csa07g00115 . Cme01g01244 . . . . . . . . . . . . . . Car19g00582 . . . . . . . . . . . . . . . . . . Chy01g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0037639 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00582 Car_Chr19 FPKM 4.734007 2.787916 13.200427 11.952752 27.542921 30.810703 31.226215 12.253631 13.608033 14.105003