Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00599 ATGGATGAAGTAACGGAAGCCGCCACCCCGCGGGTCGTAGCTCCCCCGGCACAATTTCACTCACCGTCTCTAACTCGCTCGCCTCTACTCTCTAGCGACGATCGGATCGAAACTGTGAGCAAAACTCCCAAATCTTCGAGCCCGAGACCGAGATTCAATATCACTCCAATTGGAAGTCCGATCAGAAGAGCCCTAAACTTAACGAGGCTCGACCCACATGATGCTTGGCTTCCGATCACCGAGTCGAGAAATGGAAATGCGTTCTACGCTGCCTTCCATACGCTTTGCTCCGGCATCGGAATCCAAGCCCTTGTGCTTCCCGTGGCCTTCACCATTCTTGGATGGGCTGGAGGAATCATAAGCTTGATCATAGCTTTCATTTGGCAACTTTATACTTTATATTTGATGGTTCAACTTCATGAATCAACTGAAACTGGGTTGCGCTATAGTAGATATCTTCAGCTATTTAGCACCTTCTTCAAAGTGGTTTGTGGAACTAATTGCAACGCCGATTACTTGACACCCATCGAGTGGTACTTAGTGTTCACCTGCGTTGCCGTGCTCTTGGCCCAGCTCCCTAACTTGAACTCCATCGCCGGCGTATCCCTAATCGGAGCCATCACCGCCGTCGGCTACTGCACTTTAATATGGGTAATCTCCGTCGTCAAGGGCAGATTGCCTGGCGTCTCGTATGATCCGGTGAAGCCCAGTGCCCACATAGAAAGGGCCTTTGACGCTTTGAATGCTCTTGGAATTGTGGCTTTTGCTTTTAGAGGCCACAATCTTGTCCTCGAGATTCAGTTTTCATATTTGGTCGTAGCCATATGTCTCTTTCCCCTCGCCATAGGAGGCTATTGGGCTTATGGTCAGAAGATACCCAAAAATGGAGGAATGCTTACAGCTCTATATGCCTTCCATAGTCGTGACACCTCTCAATTCCTCATCGGGTTGACAAGCTTATTCGTGATAATCAACGCTGTGAGCTCGTTCCAAATCTACGGCATGCCAATGTTCGACGCCATCGAAGCATGCTACACAAGGAGGAAGAAGCAAGCATGCCCATGGTGGCTACGAGTCATCTTACGAACAGTATTCAGCTTTCTATGCTTCTTCGTAGCGGTGGCGATCCCATTTCTCGGGAGCGTGGCTGGGCTGGTCGGAGGCATTGCGCTGCCGGTGACATTTGCTTATCCATGCTTCATGTGGCTGAAGATCAAGAAGCCTAAGAAATATGGTGTTGTGTGGTGGGTTAATTGGGTGTTGGGAGTTTTGGGGATGGGGCTGAGTTTGGCCATGATTGCAGCTGGTGTTTATGTGGTCACTAACACTGGTGTTCAAGCCAGCTTCTTTAAGCCTCACTAA 1362 49.41 MDEVTEAATPRVVAPPAQFHSPSLTRSPLLSSDDRIETVSKTPKSSSPRPRFNITPIGSPIRRALNLTRLDPHDAWLPITESRNGNAFYAAFHTLCSGIGIQALVLPVAFTILGWAGGIISLIIAFIWQLYTLYLMVQLHESTETGLRYSRYLQLFSTFFKVVCGTNCNADYLTPIEWYLVFTCVAVLLAQLPNLNSIAGVSLIGAITAVGYCTLIWVISVVKGRLPGVSYDPVKPSAHIERAFDALNALGIVAFAFRGHNLVLEIQFSYLVVAICLFPLAIGGYWAYGQKIPKNGGMLTALYAFHSRDTSQFLIGLTSLFVIINAVSSFQIYGMPMFDAIEACYTRRKKQACPWWLRVILRTVFSFLCFFVAVAIPFLGSVAGLVGGIALPVTFAYPCFMWLKIKKPKKYGVVWWVNWVLGVLGMGLSLAMIAAGVYVVTNTGVQASFFKPH 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7389645 7392923 - Carg25746-RA Car19g00599 167566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00599 453 Pfam Transmembrane amino acid transporter protein 156 439 IPR013057 -
Car19g00599 453 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00599 - - - csv:101208648 786.563
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00170 Car-Chr9:844076 Car19g00599 Car-Chr19:7389645 2.60E-158 dispersed
Car18g00963 Car-Chr18:10192506 Car19g00599 Car-Chr19:7389645 2.05E-64 dispersed
Car19g00599 Car-Chr19:7389645 Car18g00215 Car-Chr18:1214887 7.58E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g266 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1231 . . . . . Blo04g00595 . . . . . Bma03g00628 Bma08g00728 . . . . . . Car19g00599 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004727 1 1 3 4 3 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 3 1 1 1 1 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00599 Car_Chr19 FPKM 197.034485 193.139404 147.074448 158.126129 221.174759 300.059814 203.319321 151.774445 146.874985 131.874176