Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00608 ATGACCTATACACCTCCAACATGGGCGACATTTGCTGCTGCTGCATTTGTTATTCTGACTCTTGTCCTTTCACTATATCTATTGTTCGAGCACCTTTCTGCATATAAGAATCCGGAGGAGCAAAAGTTTTTGATTGGTGTTATCCTAATGGTACCAACTTATGGTGTAGAATCATTTGTATCATTGGTGTACCCATCAATAAGTGTTTATCTTGAGATCCTACGCGATTGCTATGAATCCTTTGCAATGTACTGCTTTGGACGATATCTGGTTGCTTGCTTAGGTGGGGAAGAAGGGACTATTGTATTTCTAGAGAGAGAAGGACGTTTAAATACCAAGACACCATTATTAGAACATAGCTCAGAGAAGGGAACAATCAAGCATGTTTTCCCTATGAACCTTTTCTTAAAGCCATGGAAAATTGGTGGATGGGTTTACCATGTTATCAAAATTGGGATCGTCCAATATATGATGATAAAGTCCCTCACTTCTATTTTAGCTGTAGTTCTTGAGAACTTTGGCGTTTATTGTGAAGGAGATTTTAATTTCAAATGCGGGTATCCTTATATGGCAGTGGTTTTAAATTTCAGTCAATCATGGGCATTGTACTGTCTGATTCAGTTCTATGCAGTTACGAAGAAAGAATTGATACATATAAAGCCATTCGCCAAGTTTTTTATGTTTAAATCTATAGTATTTTTGACTTGGTGGCAAGGTGTTGGAATTGCTCTCCTATCTTCCCTCGATTTGTTCAGTTCTGTAGCCCAAGGGTTACAGTTTAAGTCAAGTGTCCAAGATTTCATCATTTGTATCGAGATGGCCATTGCTTCTATGATTCACTTGTATGTATTTTCTGCAAAACCCTATGAACTTATGGGGGACCGTTATCCTGGAAGTGTTTCTGTTCTTGGCGATTATGCATCTGTCGACTGTCCTTTAGATCCAGATGAGGTCAGGGATAGCGAGCGTCCTACAAAGTTACGCCTACCCCAGCCTGACCTCGAAGACCAAGACCCCAAGATGGGAATGACAATCAAAGAGAGTGTCCGAGATGTTTTTGTTGGTGGTGGGGGCTATATTGTGAACGACCTGAAATTCACAGTAAACCAAGCAGTTGAACCTGTGGAAAAAGGAATAACGAAGTTCAATGAAAAACTGCATAAGCTCTCCCAAAACATTAAGAAACGAGACAAGGATAAAAAAAAAACCAAGGATGACAGTTGTATTAAGTCGCCCACACAAAAAGTCATTCGAGGAATCGATGACCCCCTTTTGAATGGGAGCTTCAGTGATAGCATGGTCGTTCGGGAAAAGAAGAACCGTCGAAAATCAGGTTATATAAGTGCAGAAAGTGGCGGAGAAAGCAGCAGCGATCAGGGTTATGGTAAGTACCAAGTTGCTGGGCGCCGATGGATCACCAAAGACTAG 1428 40.83 MTYTPPTWATFAAAAFVILTLVLSLYLLFEHLSAYKNPEEQKFLIGVILMVPTYGVESFVSLVYPSISVYLEILRDCYESFAMYCFGRYLVACLGGEEGTIVFLEREGRLNTKTPLLEHSSEKGTIKHVFPMNLFLKPWKIGGWVYHVIKIGIVQYMMIKSLTSILAVVLENFGVYCEGDFNFKCGYPYMAVVLNFSQSWALYCLIQFYAVTKKELIHIKPFAKFFMFKSIVFLTWWQGVGIALLSSLDLFSSVAQGLQFKSSVQDFIICIEMAIASMIHLYVFSAKPYELMGDRYPGSVSVLGDYASVDCPLDPDEVRDSERPTKLRLPQPDLEDQDPKMGMTIKESVRDVFVGGGGYIVNDLKFTVNQAVEPVEKGITKFNEKLHKLSQNIKKRDKDKKKTKDDSCIKSPTQKVIRGIDDPLLNGSFSDSMVVREKKNRRKSGYISAESGGESSSDQGYGKYQVAGRRWITKD 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7573050 7578710 - Carg04089-RA Car19g00608 167575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00608 475 MobiDBLite consensus disorder prediction 435 475 - -
Car19g00608 475 MobiDBLite consensus disorder prediction 313 339 - -
Car19g00608 475 MobiDBLite consensus disorder prediction 391 411 - -
Car19g00608 475 Pfam Organic solute transporter Ostalpha 10 289 IPR005178 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00608 - - - csv:101217133 862.833
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g01409 Car19g00608 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00570 Car-Chr15:3152632 Car19g00608 Car-Chr19:7573050 3.67E-138 dispersed
Car05g00921 Car-Chr5:8939111 Car19g00608 Car-Chr19:7573050 3.23E-08 transposed
Car11g01409 Car-Chr11:11538812 Car19g00608 Car-Chr19:7573050 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g279 . . . . . Bpe12g00146 . . Cmo19g00812 Cmo11g01781 . . . . . . Cpe15g00635 Bhi05g01598 . . . . . . Cla02g00356 Cam02g0364 Cec02g0365 Cco02g0372 Clacu02g0356 Cmu02g0353 Cre02g0683 . . . . . Csa07g00177 . Cme01g01155 . Blo13g00478 . . . . . Bma08g00721 . . . Cma11g01338 . Car11g01409 Car19g00608 . . . . . . . . . . . . . . . . Lsi11g01278 . Chy01g00604 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007981 0 8 1 1 1 1 2 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 0 1 0 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00608 Car_Chr19 FPKM 23.857298 24.213379 28.799809 29.724075 30.687769 29.244125 29.724535 42.880245 44.208916 42.986992