Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00612 ATGGACCGAGGAGCCATGCTCTCTAAAGCCGTTTACCTGAATTCCAAAAGCCCCGAATTAGCATGGCTTCTCTTCAAGCGAGTTCTTTCTTCCCCCATCTCTGCCTCCTCTTCCTTCTTCAAAACCTCCCTTCAATCTATACCTCTTATTGCCCGCATCCTCACCACTGCAAAAATGCACCCACAGATCGATCACCTTCACCAACTCCTCTTGTCGCAGCACCGGGATTTTGCTCATCCATCTGGATTTGCACTCGTTCGAGCCGTGGCTGATTTGGGTCTCTTCGAAAATGCCATTTCTCAGTTTCGATCGCTTCGAGCCAGGTTTCCTAATGACCCTCCAGATATTTCTTTCTATAATTTTCTGTTTCGATGCTCTTTGAAGGAGAGCCGGGTTGATTTTGTGATTTGGCTTTATAAGGATATGGTTTTTGCGAGAGTTAACCCACAGACTTATACTTTTAATCTGTTGATACGTGCGCTTTGTGAAATGGGGTACTTGGAGAATGCACGGGAAGTGTTTGATAAAATGTCTGAAAAAGGGTGTAAGCCTAATGAGTTTAGTCTTGGACTTATAGTTCGTGGGTATTGTAGAGCTGGGCTCCATGATCGAGGTATTGAACTTTTGGACGAGATGAGGAGCTCTGGTGCTCTTCCCAATAGGGTTGCATACAATACTGTGATATCTTCTCTTTGTGGAGAAGGTCAGACTGGGGAGGCTGAGAAATTGGTGGAAAGGATGAGAGAGGTTGGTCTTTCTCCAGATATTGTAACTTTCAATTGCAGAATTGCTGCCCTCTGTAAATCCGGGCAAATTTTAGAAGCTTCCAGAATTTTTAGAGACATGCAAATAGATGAAGAGTTAGGGTTACCTCAGCCTAATACAATAACATATAATTTAATGCTAGAAGGATTTTGTAATGAGGGAATGTTCGAGGAATCCAAGGCTCTCTTTGATTCTATGAAAAAATCTGAAACTCATTTGACCATGGAGAGCTATAACATATGGTTGTTAGGTTTGGTTAGAAGTGGAAAGCTCCTTGAAGCTCGTTTAATTCTTAATGAAATGGCAGAAAAGAGTATAAAACCCAATCTTTACTCCTATAACATTTTGATATATGGACTTTGTAAATATGGGATGTTTTCTGATGCAAGATCTATAATAGGTCTAATGAGAGAGAGTGGTGTAGCTCCAGATACTGTATCTTATAGTACCCTACTGCATGGATACTGCTGTAGAGGAAAGATACTTGAAGCCAATTATGTTCTTCGTGAAATGACACAGGTTGGTTGTTTTCCCAATATGTATACTTGTAACATCCTGCTTCACAGCCTGTGGAAAGAGGGAAAAGCATCAGAGGCTGAAGAGTTGCTACAAAAGATGAATGAAAGAGGTTATGGCTTGAATAATGTAACTTGTAATACAGTGATTAATGGCCTCTGTAAATCTGGGAATCTGGACAAAGCTATTGAAATAGTGAGTGGCATGTGGAACCATGGAAGCGCTTCTCTTGGTAATCTTGGAAACTCTTTTATTGGTCTTTTTGATATTGGCAATAATGGGATGAAGTGTTTACCTGACTCGATCACATATGCAACCATAATAAGTTGGTTATGTAAGGCGGGGCGGGTTGACGAAGCAAAAAAGAAGCTTCTGGAGATGATTGGGAAAAAGCTATCTCCGGATTCACTCATATTTGATACTTTCATACATTGTTACTGTAAACAAGGAAAGTTGTCATCTGCTTTTAGAGTACTCAAGGAAATGGAGAAAAAAGGGTGCAACAAGAGTCTTCGAACGTATAATTCTTTGATCCAGGGTTTAAGTTCTAAAAATCAAATATTTGAAATATATGGGTTGATGGAAGAGATGAAAGAAAAAGGGATTTTTCCTAATGTTTACACTTATAATAACATTATTAGCTGCCTATCTGAAGGTGGGAAACTGAAAGATGCCACCAGTCTTTTGGATGAAATGCTGCAGAAGGGGATATCTCCTAATATATATACGTTTAGGATTTTGATTGGAGCTTTCTTTAAGGCTTGTGACTTTGGAGCGGCTCAAGAGTTATTTGAGATAGCTTTAAGCCTATGTGGCCACAAGGAATCCTTGTATAGTTTTATGTTCAATGAGCTATTAACTGGAGGTGAAACATCCAAGGCTAAAGAGCTTTTTGAAGCTGCATTAGATAGATCTCTAGCCTTGAAAAATTTTCTTTACAGGGACCTAATTGAAAGGCTTTGCAAGGACGGAAAGCTAGATGATGCTAGTTTCATTCTGCATAAGATGATGGATAAGCAGTATAGGTTTGACCCTGCATCACTCATGCCGGTGATTGATGGATTAGGTAAAAGTGGGAACAAGCATGCAGCCGATGAGTTTGCAGAAAAGATGATGGAAATGGCTTCAGAAACTGATATCAACCGACATGAGAATAAGCTTAGCCGAGGAAGATCAAATAATGATGATGAAAGAGATTGGCACAAGATAGTTCACAGAAACGATGGCAGTGGGATTGCACAGAAGACGCTGAAGCGTGTGTTGAAAGGATGGGGTCAAGGAAGTATATCAACTTCGCAGCCACAGAAATTTAGCACACATGATTGCTGGGATGGTGTTGCTTAA 2625 40.27 MDRGAMLSKAVYLNSKSPELAWLLFKRVLSSPISASSSFFKTSLQSIPLIARILTTAKMHPQIDHLHQLLLSQHRDFAHPSGFALVRAVADLGLFENAISQFRSLRARFPNDPPDISFYNFLFRCSLKESRVDFVIWLYKDMVFARVNPQTYTFNLLIRALCEMGYLENAREVFDKMSEKGCKPNEFSLGLIVRGYCRAGLHDRGIELLDEMRSSGALPNRVAYNTVISSLCGEGQTGEAEKLVERMREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEELGLPQPNTITYNLMLEGFCNEGMFEESKALFDSMKKSETHLTMESYNIWLLGLVRSGKLLEARLILNEMAEKSIKPNLYSYNILIYGLCKYGMFSDARSIIGLMRESGVAPDTVSYSTLLHGYCCRGKILEANYVLREMTQVGCFPNMYTCNILLHSLWKEGKASEAEELLQKMNERGYGLNNVTCNTVINGLCKSGNLDKAIEIVSGMWNHGSASLGNLGNSFIGLFDIGNNGMKCLPDSITYATIISWLCKAGRVDEAKKKLLEMIGKKLSPDSLIFDTFIHCYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLSSKNQIFEIYGLMEEMKEKGIFPNVYTYNNIISCLSEGGKLKDATSLLDEMLQKGISPNIYTFRILIGAFFKACDFGAAQELFEIALSLCGHKESLYSFMFNELLTGGETSKAKELFEAALDRSLALKNFLYRDLIERLCKDGKLDDASFILHKMMDKQYRFDPASLMPVIDGLGKSGNKHAADEFAEKMMEMASETDINRHENKLSRGRSNNDDERDWHKIVHRNDGSGIAQKTLKRVLKGWGQGSISTSQPQKFSTHDCWDGVA 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7592421 7595685 - Carg04093-RA Car19g00612 167579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00612 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
Car19g00612 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 468 IPR002885 -
Car19g00612 874 Pfam PPR repeat 740 766 IPR002885 -
Car19g00612 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Car19g00612 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 632 666 IPR002885 -
Car19g00612 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 285 IPR002885 -
Car19g00612 874 Pfam PPR repeat family 219 260 IPR002885 -
Car19g00612 874 Pfam PPR repeat family 149 198 IPR002885 -
Car19g00612 874 Pfam PPR repeat family 631 679 IPR002885 -
Car19g00612 874 Pfam PPR repeat family 398 445 IPR002885 -
Car19g00612 874 Pfam PPR repeat family 561 609 IPR002885 -
Car19g00612 874 Pfam PPR repeat family 332 377 IPR002885 -
Car19g00612 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Car19g00612 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Car19g00612 874 Pfam PPR repeat 523 554 IPR002885 -
Car19g00612 874 Pfam PPR repeat 292 322 IPR002885 -
Car19g00612 874 Pfam PPR repeat 465 496 IPR002885 -
Car19g00612 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Car19g00612 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 597 631 IPR002885 -
Car19g00612 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Car19g00612 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 150 184 IPR002885 -
Car19g00612 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 562 596 IPR002885 -
Car19g00612 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 399 433 IPR002885 -
Car19g00612 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 527 561 IPR002885 -
Car19g00612 874 MobiDBLite consensus disorder prediction 853 874 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00612 - - - csv:101217754 1561.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00077 Car-Chr7:498334 Car19g00612 Car-Chr19:7592421 1.07E-09 dispersed
Car19g00612 Car-Chr19:7592421 Car04g00251 Car-Chr4:1423802 8.60E-35 dispersed
Car19g00612 Car-Chr19:7592421 Car04g00262 Car-Chr4:1478254 3.53E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g286 . . . . . . . . . . . . . . Sed05g2175 . . Bhi05g01588 Tan02g0581 Cmetu01g0188 Lac12g0483 Hepe02g0372 . . Cla02g00351 Cam02g0359 Cec02g0360 Cco02g0366 Clacu02g0351 Cmu02g0348 Cre02g0679 Cone12ag1274 . . . . Csa07g00182 . Cme01g01150 Blo04g00604 . . Bda14g00645 Bpe15g00786 . Bma03g00636 . . . . . . . Car19g00612 . . . . . . . . . . . . . . . . Lsi11g01282 . Chy01g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012269 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00612 Car_Chr19 FPKM 9.328078 10.469672 21.579653 22.328947 65.004494 63.792355 71.657181 12.259288 11.862977 13.49286