Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00614 ATGGGTAAGGTAGTGGAGAGGAAGAAGAGGAAGAAAGGGCGGCCATCGCTGTTGGATCTTCAAAAGCGGAATCTCAAGGAGCAGCAAGAGCAAGAAGAGCAGGAGCAGGAGCAGAAGCAAAAGCATCACCACCAAACCAAGCGAATCAATACCTCCACCGCAATTTCCAACCCTAATTACGCTTCTCCAACTCCGCTGCGGCGATCTACTCGCCGGAATCCCAACCCCGACGCCCTCACTCCCGATGAGGTCGCTGATGACCACGAGGATGCCGAATACAACGACCAATTGGCTGCGAACCGCCGCGAGAGGAAACTCAAGCTCGTCGTCAGATTGCACTCCCCCAAATCTCCCGTCAATTCGTCGTCTCTCAATTCCTGTCGTTCCGATTCTAATGCGGACGTGGACGGTAATGCTGCGTCGATTAACAAAAAGCGGAAGATCGACACGATTGGGGAGGGATCTAGGATCCAACACTCCGAGAAGGATGAGAAGTCCATGTCTGCTACAAATCCCTCGGAAACCCTTCAAGGGTCGCATATGGATTCGGCACCCTCGACGCCTTTACCAGATAAGAAGCTTTTGGTTTTCATCCTCGACAGGCTTCAAAAGAAGGACATCTATGGTGTGTTTTCTGAACCAGTGGACCCCAACGAGCTTCCAGACTACCACGAAATTATAGAGCATCCGATGGATTTTGGGACTGTTCGGGAGAAGCTTACTTCTGGAGCTTATAGCAGCTTGGAACAGTTTGAAAAAGACGTTCTCTTAATCAGTTCGAACGCAATGCAATATAATTCCTCAGATACTATATATTATCGGCAGGCGCGTACCATACAAGAGTTGGCAAAAAAGAGTTTTAAGAACTTGAGACAAGATAGTGATGATAATGAACCAGAACCTAAAGTGGTGAGAAGGGGTAGACCACCGACTAAGAATTTAAAAAAACCATTGGGTAGACCTCCCTTGGAACGTGCGGGTTCGGAGTTTTCCCCAGATGCCACTCTTGTTACTGGTGGCGAAAACACAAATCGGTCCAACGATCTGAGGAAAGGACTTCATCATTTTGAAAAGCCTGGTTTAGCTGATTTTTCTGGCAGATTCTCCTTTTCTTCCAATAGTGAAGCTGCATTTAATTTGTTTAACCAGAACAGATTTGATAGAAGCGAGGACATGACAGGTTCTGCACTGAGATTCAATTCAGTAAGACAGGGGAAAAAACCGATCGTCTCCGATGAGAATAGGCGTGATACATATAAGCAATTTCAAGCGGCAACTACTTTACTGGAGCCCTCTGTGCTGAATACATTTGATAGAGAGAGGAAGGTTTTAATGCCAGTTGGGCTTTTCTTGGAGCATGCTTATGCACGAAGCCTCGCTCGATTTGCTGCAGATCTTGGATCTGTAGCATGGAGAGTTGCTTCTAAGAAAATTGAGAGAATTTTACCCACAGGTTCGAGTTTTGGTCCTGGATGGGTTGTAGAAGATGATACCACACCAAAGAGGGTGTTTCTACCGCAAGCTGAACTCGGTCAAAAGTCGACGTTGCATGAAAGTTTGGCTCCTGATGTAAAGCCTCTTGCTCCTGAACAAAAGACGGTTCGATCATCCGACAACTCTGAAGCTGATACGTCGTCTAAGATGCATGATGAGCCTTCTCATGTCCCCAGTTCAGATGGCTATTTACCCTCCAGGCCTCCCGCTGAGTTCTCTGCAGCTTCTTCATCATCGCCATCGAGTACTCGACAATCTTCAGAGCCCTGCAGGGGACAGACGGAAACAGTTGAAGGATTAAATCCCAGTAGTGATTATAATGTATTGGAAAGTAGTATTCCAATCTCGAGGCCTTCGTTACAGAAACACGAGAATCTAACAATCCGCCATGGTATGAATGGATTCAATGGTGCTTATGGCTTTGATCTCTCTGCTCACAGGGGGAAACTAATAGGCGCATCGTCCGAGCCTGCTTGTGTAAAGCCTCAGTCATCATCTCAAATGCTCGAGATGATCTCGAGGACTAATGCTAATTTCATCCTTCCAGCAATGGCAACCCGACTGAATCTGAAAGAACCAAAATGTCCCGAAAACAATCTTGGTACAACAAACTCTTCCAGTTCATTGCTCGGGTCGGGGAACGAGACTCTTATGGAAACACCATGGCGGCAGCAGCAGCAGCAGCCGCAGGGGCCATCACCAGCACCAGCACCAGAAGAAACAGCAGTAACAACAACAACAACAACAACACTATACAAACCCGAATCCGTTCCCCCGGACCTGAACGTGAGATTTAAATCTCCAGGATCTCCTCCTCCTAGCTCTAGTAAGGTGGACTCTGCTCACCCTGATTTAGTTTTACAGCTCTGA 2364 47.21 MGKVVERKKRKKGRPSLLDLQKRNLKEQQEQEEQEQEQKQKHHHQTKRINTSTAISNPNYASPTPLRRSTRRNPNPDALTPDEVADDHEDAEYNDQLAANRRERKLKLVVRLHSPKSPVNSSSLNSCRSDSNADVDGNAASINKKRKIDTIGEGSRIQHSEKDEKSMSATNPSETLQGSHMDSAPSTPLPDKKLLVFILDRLQKKDIYGVFSEPVDPNELPDYHEIIEHPMDFGTVREKLTSGAYSSLEQFEKDVLLISSNAMQYNSSDTIYYRQARTIQELAKKSFKNLRQDSDDNEPEPKVVRRGRPPTKNLKKPLGRPPLERAGSEFSPDATLVTGGENTNRSNDLRKGLHHFEKPGLADFSGRFSFSSNSEAAFNLFNQNRFDRSEDMTGSALRFNSVRQGKKPIVSDENRRDTYKQFQAATTLLEPSVLNTFDRERKVLMPVGLFLEHAYARSLARFAADLGSVAWRVASKKIERILPTGSSFGPGWVVEDDTTPKRVFLPQAELGQKSTLHESLAPDVKPLAPEQKTVRSSDNSEADTSSKMHDEPSHVPSSDGYLPSRPPAEFSAASSSSPSSTRQSSEPCRGQTETVEGLNPSSDYNVLESSIPISRPSLQKHENLTIRHGMNGFNGAYGFDLSAHRGKLIGASSEPACVKPQSSSQMLEMISRTNANFILPAMATRLNLKEPKCPENNLGTTNSSSSLLGSGNETLMETPWRQQQQQPQGPSPAPAPEETAVTTTTTTTLYKPESVPPDLNVRFKSPGSPPPSSSKVDSAHPDLVLQL 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7603348 7607938 - Carg04095-RA Car19g00614 167581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00614 787 MobiDBLite consensus disorder prediction 140 168 - -
Car19g00614 787 MobiDBLite consensus disorder prediction 1 99 - -
Car19g00614 787 ProSiteProfiles Bromodomain profile. 203 273 IPR001487 GO:0005515
Car19g00614 787 MobiDBLite consensus disorder prediction 115 138 - -
Car19g00614 787 MobiDBLite consensus disorder prediction 1 16 - -
Car19g00614 787 Coils Coil 17 45 - -
Car19g00614 787 MobiDBLite consensus disorder prediction 514 602 - -
Car19g00614 787 MobiDBLite consensus disorder prediction 289 307 - -
Car19g00614 787 MobiDBLite consensus disorder prediction 49 76 - -
Car19g00614 787 MobiDBLite consensus disorder prediction 169 184 - -
Car19g00614 787 MobiDBLite consensus disorder prediction 289 343 - -
Car19g00614 787 MobiDBLite consensus disorder prediction 691 787 - -
Car19g00614 787 MobiDBLite consensus disorder prediction 17 42 - -
Car19g00614 787 MobiDBLite consensus disorder prediction 569 602 - -
Car19g00614 787 MobiDBLite consensus disorder prediction 694 728 - -
Car19g00614 787 Pfam Bromodomain 198 277 IPR001487 GO:0005515
Car19g00614 787 MobiDBLite consensus disorder prediction 111 187 - -
Car19g00614 787 ProSitePatterns Bromodomain signature. 209 265 IPR018359 -
Car19g00614 787 MobiDBLite consensus disorder prediction 737 753 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00614 K22184 BRD9; bromodomain-containing protein 9 - csv:101218234 1104.35
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g01413 Car19g00614 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00997 Car-Chr1:9445024 Car19g00614 Car-Chr19:7603348 2.59E-37 dispersed
Car09g00874 Car-Chr9:5335676 Car19g00614 Car-Chr19:7603348 1.79E-85 dispersed
Car19g00614 Car-Chr19:7603348 Car11g01325 Car-Chr11:10913021 2.85E-13 dispersed
Car08g00216 Car-Chr8:1335676 Car19g00614 Car-Chr19:7603348 8.32E-11 transposed
Car01g01587 Car-Chr1:13145250 Car19g00614 Car-Chr19:7603348 2.05E-90 wgd
Car11g01413 Car-Chr11:11567020 Car19g00614 Car-Chr19:7603348 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g294 . . . . . Bpe12g00149 . . Cmo19g00818 Cmo11g01786 . . . . . Cpe04g00631 Cpe15g00642 Bhi05g01248 Tan02g0781 . . . . . Cla02g00347 Cam02g0356 Cec02g0357 Cco02g0363 Clacu02g0348 Cmu02g0345 Cre02g0677 . . . . . Csa07g00186 . Cme01g01147 Blo04g00606 Blo13g00473 . Bda14g00648 Bpe15g00784 . Bma03g00637 Bma08g00717 . . . Cma11g01333 Cma19g00798 Car11g01413 Car19g00614 . . . . . . . . . . . . . . . . Lsi11g01285 . Chy01g00594 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005813 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00614 Car_Chr19 FPKM 1.068232 0.815536 3.058087 3.003818 3.462578 4.031215 3.055788 2.371583 2.449199 1.679671