Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00623 ATGGTGGGAGATGCTCGTGTGCAGGTTGCAGCATTTTCTGTGGCGTTACCCTCATCCTTGGTTACCCTTCCACATAGATCTTCAAGTAGGTTGTCTTATCGTCTCCCATTCGGTCTAAAATCCAAAGTAAAGAAGATAAAGGCTACATCTGCTGATGCTGGACATAGTCAGCCACCCTCATCTTCAGAAAGAAGGAATCCGCTCGCCCTTTTTCTCGATGTTCCTCGTACTGTATGGAGGAGAACCTTGCGTCCATTGAGTAATTTCGGGTTCGGTCGAAGGAGCATATGGGAAGGTGGGGTTGGGTTGTTCCTTGTGTCAGGTGCTATACTTCTTACACTCAGTTTGGCTTGGTTGAGAGGCTTTCAATTACGGTCTAAATTTAGAAAATACTTGGCTGTCTTTGAGTTTGCTCAGGCTTGTGGTATTTCGACTGGAACTCCTGTAAGAATTAGAGGAGTTACTGTTGGCAATGTCATTCGTGTTAACCCTTCCTTGAGATGTATTGAAACTGTTGTTGAGGTTGAAGATGATAAAATCATTATACCCCTTAATTCATTGGTTGAAGTAAACCAGTCTGGTCTTCTTATGGAGACGATGATTGACATTACCCCCAGGGATCCTATTCCAGTGCCTTCAGCGGGACCACTCGACTCCGAATGTATTAAAGAAGGCTTAATATTATGTGATAAGCATAAAATGAAGGGACGTCAAGGGGTAAGTTTGGATGCATTAGTTGGAATATTCACTCGGCTTGGACGCGAAGCGGAGGAAATAGGGCTTTCTAATACGTTTTCTTTAGCCCAACGAGTTGCTTTGGTTGTTGAAGAAGCAAGGCCTTTGCTTTTAAAGATTCAAGCCATGGCTGAAGATGTTCAACCTTTGCTTGCTGAGGTTCGTGACAGTGGTCTTCTAAAGGAGGTTGAAAACTTAACTAGCAGTCTTTCACATGCCACAGAAGATTTAAGAAGCGTGCATGCGTCGATTATGACCCCGGAAAACACAGAGCTTCTTCAGAAGTCCATATATACGCTAATTCATACTTTGAAGAACATAGAGCCTTGGCTGGAAAAAGCTATGGATGATGATGGCCATTTACTTTCCTATCATTGGGAAGCGCTTACAGGTTTCTTTGTTAGGATTTCAATGGCGTTCGCTTCTTCTAGTAGTGTTATCTGTCAGAACAGAGCCTTGTCGTCCTCCGTCGTTTCTTCTCCGGGACTTTTACACCATCGCTGCTTCTCACGGCTTCAATCGCAGCGTATTCTTCATTGCAATCGTCCTTTGTCTTCGAACATCGGGATAAACGCCGCTCCGTCTCTTTCTTCGGCGCCCTCTTCCGTCGTCGCTAAAACTGCTCTATCCGATGCTCATGTTCAAAGTCAGAGCTCCAGTTCTGCTCCTGGTAGTGGGTGGTCTGATTTTGCCAAAAACGTCTCTGGCGAATGGGATGGATATGGTGCGGAATTTTCTTCTGGAGGAACGCCAATTGAACTTCCAGAATTCGTTGTCCCCGATGCTTATAGGGAATGGGAGGTTAAGGTTTTCGACTGGCAGACTCAGTGCCCCACTCTTGCGGAACCTGAGAAGCCCTCTTTCATGTACAAGACAATAAAGCTACTTCCTACAGTGGGATGTGAAGCCGATGCTGCAACCCGTTACAGCATTGATGAGAGAAATGTTGGAAATGGAATTGGTTCAAATGATGAAGTGACTGCCTTTGCGTATCAACGTAGTGGATGTTATGTAGTTCTTTGGCCGGTTAAGGTTGTGGGTTCTTATAAGTTAATGGAGTTGGAGCATTGCCTGGTTAGTCCTCAAGATCGTGAATCCCGTGTGAGGGTTGTTCAGGTTGTCCGAGTCGAAGGCACACGGCTAGTGTTGCAGAGTATCAAAGTTTTCTGCGAGCAGTGGTATGGACCATTCAGAAACGGAGAACAGCTTGGTGGATGCGCCATCCGAGACTCATCATTTGCTTCTACAGCTGCCTTGAAAGCTTCTGAGGTTGTTGGTTCATGGCAGGGTCCTGTCTCTGTTGCCCGTTTTGATGGTTCTCAGATTAATGTTATACAAGAACTTTTGGCTGACAATGTGCAAAAGTCGGTGAGAACTGAATCAGAACTCAAGGAAATATCGATTGCAAATGAGACCCCTGCTTAA 2160 45.28 MVGDARVQVAAFSVALPSSLVTLPHRSSSRLSYRLPFGLKSKVKKIKATSADAGHSQPPSSSERRNPLALFLDVPRTVWRRTLRPLSNFGFGRRSIWEGGVGLFLVSGAILLTLSLAWLRGFQLRSKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVIRVNPSLRCIETVVEVEDDKIIIPLNSLVEVNQSGLLMETMIDITPRDPIPVPSAGPLDSECIKEGLILCDKHKMKGRQGVSLDALVGIFTRLGREAEEIGLSNTFSLAQRVALVVEEARPLLLKIQAMAEDVQPLLAEVRDSGLLKEVENLTSSLSHATEDLRSVHASIMTPENTELLQKSIYTLIHTLKNIEPWLEKAMDDDGHLLSYHWEALTGFFVRISMAFASSSSVICQNRALSSSVVSSPGLLHHRCFSRLQSQRILHCNRPLSSNIGINAAPSLSSAPSSVVAKTALSDAHVQSQSSSSAPGSGWSDFAKNVSGEWDGYGAEFSSGGTPIELPEFVVPDAYREWEVKVFDWQTQCPTLAEPEKPSFMYKTIKLLPTVGCEADAATRYSIDERNVGNGIGSNDEVTAFAYQRSGCYVVLWPVKVVGSYKLMELEHCLVSPQDRESRVRVVQVVRVEGTRLVLQSIKVFCEQWYGPFRNGEQLGGCAIRDSSFASTAALKASEVVGSWQGPVSVARFDGSQINVIQELLADNVQKSVRTESELKEISIANETPA 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7665784 7673285 - Carg04104-RA Car19g00623 167590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00623 719 Pfam MlaD protein 130 205 IPR003399 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00623 - - - csv:101220839 625.55
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car19g00623 Car20g00610 CCT
Car11g01422 Car19g00623 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00501 Car-Chr1:2949110 Car19g00623 Car-Chr19:7665784 0 transposed
Car11g01421 Car-Chr11:11613994 Car19g00623 Car-Chr19:7665784 1.76E-171 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g304 . Blo15g00416 Bda06g00447 . Bpe07g00680 . . . Cmo19g00827 Cmo11g01795 Cma02g00303 Cma20g00710 . Car20g00610 Sed05g2144 Cpe04g00638 . Bhi05g01555 Tan02g0555 Cmetu01g1370 Lac12g0460 Hepe02g0357 . . Cla02g00335 Cam02g0344 Cec02g0345 Cco02g0350 Clacu02g0335 Cmu02g0333 Cre02g0665 . . . . . Csa07g00202 . . Blo04g00609 . . Bda14g00651 Bpe15g00778 . Bma03g00641 . . . Cmo20g00705 Cma11g01325 Cma19g00805 Car11g01422 Car19g00623 . . . . . . . . . . . . . . . . Lsi11g01299 . Chy01g00577 Cme11g01035
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011660 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00623 Car_Chr19 FPKM 7.15276 8.890857 12.481461 15.230645 4.478451 3.840748 4.401704 25.980532 26.845301 25.382858