Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00630 ATGGAGGACTGCCTGAGGGAGTCCATGCGAAAATTAGCCCTCTGGTTAACCAAAACCTTCAAGCCAATCATGACGCATGACGAGCTCGAACCTATTATGGTCACTCTAGGCTTTATCGCCTTGGAACCGGCCGTCAACGGCGCCGGAATCTCCTGGAAATCCTACAAATACTCCGCCGCAGATTGCCGTACTAAGTCTGTTTCTCCGCCGCCGCCAATACCGCGACTGCCGTATCCGAGGATCGACGGTCTTCATATTTATACGTACAGAGCATTTCTCGATGCCGTCAATTTTTATCTCGAGAAATTTGATATCTCCGATCTCTTCCATATTAGAGGATTGCCATTGTATCGAAACCATGATCGAAATAGAAAGTGGCGTCGAATAGACGAAGAAGGAGGTAATTTTGTTTATAGAGAAGGGACTCTAGATCAAACAACACTCAATTTGTATAACTTTCATAAGACTTGGCCGAATAACAAGAGATACAAAAAGAATGAGAGTAGTTCCAGTACCAGCGACGAAGAAAATGATGATTCTAGTAAAAAAATTGAAGATCCCATCTGCGTTGTTAGTTTGAAAGATGTAATAACATAA 597 43.05 MEDCLRESMRKLALWLTKTFKPIMTHDELEPIMVTLGFIALEPAVNGAGISWKSYKYSAADCRTKSVSPPPPIPRLPYPRIDGLHIYTYRAFLDAVNFYLEKFDISDLFHIRGLPLYRNHDRNRKWRRIDEEGGNFVYREGTLDQTTLNLYNFHKTWPNNKRYKKNESSSSTSDEENDDSSKKIEDPICVVSLKDVIT 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7698786 7701892 + Carg04111-RA Car19g00630 167597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00630 198 MobiDBLite consensus disorder prediction 167 183 - -
Car19g00630 198 MobiDBLite consensus disorder prediction 162 183 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00630 - - - csv:101221709 342.813
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g01426 Car19g00630 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01426 Car-Chr11:11636641 Car19g00630 Car-Chr19:7698786 9.51E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g311 . . . . . . . . Cmo19g00832 Cmo11g01800 . . . . Sed04g3773 Cpe04g00642 Cpe15g00654 Bhi05g01546 Tan02g0544 Cmetu01g0725 Lac12g0453 Hepe02g0348 . . Cla02g00330 Cam02g0339 Cec02g0340 Cco02g0343 Clacu02g0330 Cmu02g0328 Cre02g0660 . . . . . Csa07g00210 . . . . . Bda14g00654 Bpe15g00774 . Bma03g00645 . . . . Cma11g01321 Cma19g00811 Car11g01426 Car19g00630 . . . . . . . . . . . . . . . . Lsi11g01305 . Chy01g00569 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011661 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 0 1 0 1 1 1 2 0 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00630 Car_Chr19 FPKM 3.010983 4.454094 2.341531 2.894627 2.79168 2.600138 2.754355 3.269517 2.578809 2.988775