Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00634 ATGGCGACTATAGTAGGGACGCCATGGGTGAGGATTAGGGCCTTCCCGATGCTGAATCCTCCAATTCTGCATCACTCAAACTTGTATTTTGCGGAGAGATGCTTCCCTAAATTTCGAAGGAGTTTCTCGGTGTCGGCGTCTGTGGATAAGGTCGATGGAGAAGTTAGAGTCCGTTTTGCTCCTTCGCCTACTGGAAATCTTCATGTTGGTGGAGCAAGAACTGCCCTCTTCAATTACTTGTTTGCTAGGGCCAATGGTGGAAAGTTTGTTCTGAGAATTGAAGATACTGACTTGGAAAGGTCCACTCGACAATCTGAGGAGGCCGTGTTGAAAGATCTTTCATGGCTTGGTCTCGACTGGGATGAAGGTCCAAGTGCTGGAGGAGATTACGGTCCTTACCGACAATCAGAAAGAAATACTTTATACAAACAGTATGCGGAGAAGCTTTTAGAATCCGGTCAAGTATATCGATGTTTTTGTTCAAACGAGGAACTAGAAAAAATGAAGGAGGTCGCAAAGCTGAAGCAACTGCCACCTGTATACATGGGAAAGTGGGCCACTGCTACTGATGAAGAAGCACAGGAAGAATTGGAAAAGGGTACCCCTTACACGTATCGATTTCGCGTGCCTCAAGAAGGGAGTTTGAAAATCAATGATCTCATACGAGGGGAAGTTAGCTGGAACTTGAATACACTTGGAGATTTTGTAATTATGAGGAGCAATGGGCAACCCGTCTATAATTTTTGTGTCACTGTTGATGATGCTACCATGGCTATCTCACATGTCATAAGGGCAGAGGAACATCTACCAAACACTCTTAGGCAGGCGCTGATATATAAGGCTCTTGGTTTCCCAATGCCTTACTTTGCACATGTTTCCTTAATTCTTGCACCTGATCGTAGTAAACTATCAAAACGACATGGTGCAACATCAGTTGGTCAGTTCAGGGAGATGGGATATCTACCCGAGGCTATGGTTAACTACTTGGCTCTATTAGGTTGGGGGGATGGTACCGAGAATGAGTTTTTTACTCTCGAACAACTTGTGGAAAAGTTTTCAATTAGCCGTGTAAACAAAAGTGGTGCTGTTTTTGATTCTACCAAGTTAAGGTGGATGAATGGTCAGCATTTGAGAGCCCTTCCATCTGAGGAATTGACCAAGCTTATTGGTGAGCGCTGGAAGAGCACGGGTGTCCTGACAGAATCAGAGGGGCCATTTATTGAGGAATCAGTTCATCTGCTGAAAGATGCAATTGATTTGGTAACTGATGCTGACAAGGCGCTCTCAAACCTTCTGTCCTATCCTCTGCACACTACGCTGACAAGTTCCGAAGCTAAGCCTCTTGTAGAAGATAAGCTTTCCGAATTTTCAGCCAGCCTCATAGCTGCATATGATAGTGGCGAAATCCTCAGTGCGCTTGAAGAAGGCCCTTCTGGCTGGCAGAAGTGGGTGAAAACTTTTGGTAAATCATTAAAACGCAAGGGAAAATCACTTTTCATGCCACTACGTTTGTTGCTCACTGGGAAAATTCATGGCCCTGATATGGGGGCCAGCATGGTCTTACTCCATAAAGCGGGATCGTCCGGTGTCGTTGCTCCTCAAGTCAGGTTCGTGACACTTAACGACAGGTTTGAAATTCTTAGACAAATTGACTGGGATTCAGTGATCCAGGATAGCCCCCTTTTCGAGTCATCTGCCCCTGCGTCGGTCCCGAACTGA 1719 45.55 MATIVGTPWVRIRAFPMLNPPILHHSNLYFAERCFPKFRRSFSVSASVDKVDGEVRVRFAPSPTGNLHVGGARTALFNYLFARANGGKFVLRIEDTDLERSTRQSEEAVLKDLSWLGLDWDEGPSAGGDYGPYRQSERNTLYKQYAEKLLESGQVYRCFCSNEELEKMKEVAKLKQLPPVYMGKWATATDEEAQEELEKGTPYTYRFRVPQEGSLKINDLIRGEVSWNLNTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFPMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPEAMVNYLALLGWGDGTENEFFTLEQLVEKFSISRVNKSGAVFDSTKLRWMNGQHLRALPSEELTKLIGERWKSTGVLTESEGPFIEESVHLLKDAIDLVTDADKALSNLLSYPLHTTLTSSEAKPLVEDKLSEFSASLIAAYDSGEILSALEEGPSGWQKWVKTFGKSLKRKGKSLFMPLRLLLTGKIHGPDMGASMVLLHKAGSSGVVAPQVRFVTLNDRFEILRQIDWDSVIQDSPLFESSAPASVPN 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7707363 7714015 + Carg04115-RA Car19g00634 167601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00634 572 Pfam Anticodon binding domain 401 525 IPR045462 -
Car19g00634 572 Hamap Glutamate--tRNA ligase [gltX]. 54 538 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Car19g00634 572 Pfam tRNA synthetases class I (E and Q), catalytic domain 54 371 IPR020058 GO:0004812|GO:0005524|GO:0043039
Car19g00634 572 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 61 72 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00634 K01885 EARS, gltX; glutamyl-tRNA synthetase [EC:6.1.1.17] - csv:101212759 1081.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00859 Car-Chr15:4995439 Car19g00634 Car-Chr19:7707363 9.26E-06 dispersed
Car19g00634 Car-Chr19:7707363 Car11g00986 Car-Chr11:6666026 1.55E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g314 . Blo15g00412 Bda06g00451 . Bpe07g00684 . . Bma12g00888 Cmo19g00835 . . . . . Sed05g2139 . Cpe15g00657 Bhi05g01543 Tan02g0541 Cmetu11g0170 . Hepe02g0346 . . Cla02g00327 Cam02g0336 Cec02g0336 Cco02g0340 Clacu02g0327 Cmu02g0325 Cre02g0658 . . . Cone10ag1201 . Csa07g00215 . . . . . . . . . . . . . . Cma19g00816 . Car19g00634 . . . . . . . . . . . . . . . . Lsi11g01310 . Chy01g00566 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010497 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00634 Car_Chr19 FPKM 9.538095 8.199508 22.422667 18.403296 0.501176 0.134675 0.321298 0.255029 0.587238 0.778452