Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00635 ATGTCGATTTCGCAAACACTAGGTGGCACGTCCAGATGTGGCCGTGCGATCGGCCCTTCCCTTGACAAGATCGTTAAGAATGCGGCTTGGCGTAAGCATTCTCACCTTGTTTCCTCTTGCAAATCCGTTCTCGATAAGCTTGATTCTATTAAGGAGGCTGCTCTTGATCCCGCATCCCCGATTGCTGGTCTTTCACCGGCTGATGCGGAGTTTGTGCTCCAACCCCTCCTTTTGGCTCTTGATGCCGCCTACGTCAAGGTTTCCGAGCCCACGCTTGAGTGCGTCTTCAAATTGTTCTCCCGCGGTATTTTCTGTGGGGAGATCGAGCGGCCGGATGGCGAGGCGAATTCCGGTGCCAAATCCATTATGTATAAGATCATTGAGTCTGTTTGCAAGTCGGGAGGTCTAGGTGATGAAGGAATTGAGCTCACTGTTCTCAGAGTGTTGCTCTCTGCGGTTCGATGCCCTTGTGTATTGATCCGCCGGGATTGTCTGGTTACTGTTGTTCGGAATTGTTATAATGTCTATCTGGGTGGTTTAAGTGTTACGAATCAGATCTGTGCGAAATCCGTTCTAGCTCAAATAATGGTCATTGTTTTCAGTAGGGCGGAGGAGAACTCCATGGATGCTCCTTTGAGGATAATTACTGTGAGTGAATTGTTGGAATTTACAGATAAGAACTTGAATGAAGGCAATTCTTTATACTTTTGCCAGAACTTTATTAACGAGATAATGGATGCTAGCGAAGGGATTGCGGACTTGAAGCTTTATTCATTTTCGGCACAATTGCAGAATGGCCATGCTTCGCCACTGAAAGGTGACAATAAAGGTGAATCTGATGTAGGAGAAGTGGAGGATGGAGCTGAATCAGGTGGCTATAGTAAGATTAGGCTGGATGGATTCCATTTGTTTAAGAATTTGTGTAAATTGTCGATGAAATTCTCATCACCGGAGCACCCAGATGATCAGATCCTCTTAAGAGGGAAAATATTGTCTCTGGAACTGCTAAAGGTGGTCATGGGTAATGCAGGCCCGGTTTGGCGCTCTAACGAGAGGTTTCTCAATTCTATCAAGCAATTTCTCTGTTTATCATTATTAAAAAACAGTGCCCTGTCGGTGATGGCCATCTTCCAGCTTCAATGTTCTATTTTTACGAGCTTGTTGACAAAATTTAGATCAGGATTGAAAGCAGAAATTGGTATCTTTTTTTCCATGCTTATCCTCCGAGTGCTTGAGAATGTACTCCAGCCTAGTTTCTTGCAGAAGATGACCGCGCTTAATTTGTTGGATAAGATATCTCAAGATTCACAGATTATGGTTGATATTTTTGTCAACTACGATTGCGATGTTGATTCCCCAAATATTTTCGAGAGGATGGTGAATGGCCTTTTGAAAACTGCTCTTGGACCACCTTCTGGTTCAACCACAACATTGTCTCCAGCACAGGATGTCTCATTTAGGCTTGAATCTGTTAAGTGTTTAGTAAGCATCATTAAATCAATGGGAACTTGGATGGACCAACAATTGAAGCTAGATGATACATATTTTCTCAAGACTTCTGAGAACGATGCTTCTCCCGAGAATCCTTTAAGTGGGGAAGAAACAGCTGCTGTTGACCCTGAGCTTCAATCAGATGGAAATTCTGAGTTCTCAGATGCTGCAACACTTGAGCAACGAAGAGCTTACAAAATTGAACTCCAGAAAGGTATTTCGCTGTTCAATAGGAAACCTTCCAGGGGTATTGAGTTTCTAATTAGCACAAAAAAAGTTGGTGGTTCTCCTGAAGAGGTGGCTTCTTTTCTCAAGAATACCAACGGCCTGAATGAAACAGTCATTGGGGATTATTTGGGTGAAAGGGAGGAATTCCCTTTGAAAGTTATGCATGCTTACGTTGATTCCTTTAATTTTAATGCGATGAACTTTGGCGAAGCAATAAGGTTTTTCCTGCGAGGCTTCAGGTTGCCAGGAGAGGCACAAAAGATTGACCGCATCATGGAGAAGTTTGCTGAGCGGTACTGTAAATGTAACCCTGGTTCATTCACAAGTGCAGATACTGCTTATGTTCTGGCTTATTCTGTAATTATGCTGAACACGGATGCTCATAATAACATGGTGAAAGAAAAGATGACAAAAGCTGATTTTATCCGAAATAATCGAGGAATTGATGATGGCAAGGATTTACCTGATGAGTATCTTGGTACTCTCTATGATCAGATTGTTAGGAATGAAATTAAGATGAATTCTGATTCTTCAGCTTCACAAAGTAAGCAGGCAACTAGCATCAACAAACTTTTGGGCTTCGATGGTATACTCAATTTAGTTTCTTGGAAGCAGACAGAAGAGAAAGCCGTTGGCGCCAATGGGCTTCTTATAAAGCACATACAGGAGCAGTTTAAGGCGAAGTCTGGAAAATCTGAATCTGTTTATCACGCTGTGACTGATATAACAATATTGAGGTTTATGGCGGAAGTCTGCTGGGGTCCTATGTTGGCGGCATTTAGTGTGACTCTTGACCAAAGCGATGATAATGTTGCTACTTCTCAGTGCTTATTAGGCTTTCGGCATGCTGTGCATGTCACAGCTGTCATGGGCTTGCAGACTCAACGGGATGCTTTCGTGACGTCCATGGCTAAGTTTACCTATCTTCATTGTGCTGCAGATATGAAACAAAAAAATGTTGAAGCTGTGAAGGCTATAATATCAATTGCCATAGAGGATGGTGATTTTCTTCAAGAGGCATGGGAGCACATATTTACATGTCTCTCTAGAATTGAGAATTTACAATTATTGGGAGAGGGTGCACCACCCGATGTATCCTTTTTGACAACGTCAAATATTGAAGCTGAAGAGAAGGCACTGAAATCGATGGGTTTATCAACTCTGAAGAAAAAAGGTCTCCAAAATCCAGCTGTTATGGCCGTTGTTCGTGGAGGTTCATACGACAGCACCTCTCTTAGAGCGAATTCTCCCGGACCAGTAACTCCCGAACAGATTAACCACCTAATTTCAAACTTGAATTTGCTGGATCAAATAGGCAATTTTGAGTTGAACCACGTATTTGCTCATAGTCAAAGCTTGAACGGTGAAGCAATTGTAGCATTTGTGAAGGCCCTTTGCAAAGTTGCTATTGCAGAGTTGCAGGCTCCTACAGACCCACGTGTGTTCAGCCTCACCAAATTAGTTGAAGTGGCGCATTACAACATGAACCGCATCAGATTGGTGTGGTCTCGCATGTGGAATGTTCTCTCTGATTTCTTTGTGTCAGTTGGCTTATCAGAAAATCTGTCAGTTGCAATATTTGTGATGGACTCACTGAGACAGCTCGCCATGAAATTTTTGGAGCGTGAGGAGCTTGCGAATTATAACTTCCAGAATGAATTTCTGAGACCTTTCGTAATCGTTATGCAGAAAAGCAACTCCACGGAAATTAGGGAATTAATAGTTCGATGCATTTCGCAGATGGTTCTCAGTCGGGTCAATAATGTGAAATCTGGATGGAAAAGTGTTTTCATGGTTTTCACTGCTGCTGCTGCTGATGAGCGGAAGAACATTGTCTTATTGGCATTTGAAACCATGGAAAAAATAGTTCGAGAATACTTCCCTTATATAACTGAAACTGAAACCACAACATTTACTGATTGTGTTCGATGTCTGATAACTTTTACAAATAGCAGATTTAACAGTGATGTAAGTCTCAATGCCATTGCATTCCTCCGGTTTTGTGCCGTAAAACTTGCGGAAGGGGGACTTGTTTGCTATGAGATGGTGGGAGAAAATGGTTCATCCAAATCTCTTGATGCACCCACACCTACACCCACACCCCCAGATAAGGATGATTATGCTTCCTATTGGGTTCCTCTGCTTGCAGGGCTATCAAAGTTAACATCCGATCCTAGATCACCAATCAGGAAAAGTTCCTTGGAAGTACTTTTTAATATCCTGAAGGATCATGGCCATCTTTTCTCACGTCAATTTTGGGTTGGTGTTAGCAATACCGTAGTTTTCCCCATATTCAATTCTTTGCATGAGAAGAAAGAAGTGGACATGAATGAACATGATGAACATTCAGAAGGAAGTACCTGGGATTCTAGTACCTGTCAAGTGGCAGCTGATTGTTTAGTAGATCTGTTCATTAGTTTTTTCAGTGTAATAAGGTCTCAACTGCCCGGCGTGGTGAGGATTCTGACCGGACTCATTAGTAATCCGATCAAGGGTCCTGCCAGCACAGGCGTCACTGCGTTGATGCGTTTGGTAGGTGACTTGGCTAATAGGCTTACTGAAAAGGAATGGAGAGAGATTTTTCTTGCTATGAAGGAAGTGGCCACATTACCTGTGCCTGGATTTATCAAGGTCCTGAGAACCATGGATGACGTTAATGTTCCCGGGATCTCTCGATCTTCTAATGATGTCGATGTTGCTTCAGATCCAGGTCTTTCAACCGATGGTCTTGATGACGATGATCTGCAAACGGCCACCTACATTGTTTCGAGAATGAAGAGTCATATCTCTATGCAACTCCTCTTCTTACAGGTCGTTACTGATCTCTACAAGAGCCATACCCAACCATTCTCATCAGACAACATTTCCATCATTCTAGACATCTTTTCTTCCATTTCCGCACACGCCCAGAAACTGAATTCCGACACGATCCTTCAAAAGAAGCTACAGAAAGTATGCTCCATCCTGGACATATCCGACCCACCCGTGGTTCACTTCGAAAACGAAACTTATCAGAGCCACCTCAACTTTCTCGAGAGTATGCTCGCGAAAAACCGCTTACTAACCGATTCAACTCTTATTGAATCCAAACTCATCACGTTATGTGAAGAAATTTTACATATTTACTTAAAGTGCACCGAGATGCCAGGTCAGCCGAAAGAAACCAACCCGGCCTTGCCACATTGGATTCTTCCTTTGGGTCCAGAAAGGAAGGAGGAACTGGCAGCTCGAACGTCTCTAGTCGCCTCAGCATTACGAGTTCTTAGCGGGTTCGAAAGGGATCTATTTAAAAGGTATGCTCCACAGCTTTTTCCATTGTTGGTAGAGCTTATAAGGAGTGAACATAGCTCTGGAGAAGTTCAGGTTGTTTTGAGCAGCATATTTCAATCATGTATAGGCCCAATAATCATGCAATAA 5136 42.85 MSISQTLGGTSRCGRAIGPSLDKIVKNAAWRKHSHLVSSCKSVLDKLDSIKEAALDPASPIAGLSPADAEFVLQPLLLALDAAYVKVSEPTLECVFKLFSRGIFCGEIERPDGEANSGAKSIMYKIIESVCKSGGLGDEGIELTVLRVLLSAVRCPCVLIRRDCLVTVVRNCYNVYLGGLSVTNQICAKSVLAQIMVIVFSRAEENSMDAPLRIITVSELLEFTDKNLNEGNSLYFCQNFINEIMDASEGIADLKLYSFSAQLQNGHASPLKGDNKGESDVGEVEDGAESGGYSKIRLDGFHLFKNLCKLSMKFSSPEHPDDQILLRGKILSLELLKVVMGNAGPVWRSNERFLNSIKQFLCLSLLKNSALSVMAIFQLQCSIFTSLLTKFRSGLKAEIGIFFSMLILRVLENVLQPSFLQKMTALNLLDKISQDSQIMVDIFVNYDCDVDSPNIFERMVNGLLKTALGPPSGSTTTLSPAQDVSFRLESVKCLVSIIKSMGTWMDQQLKLDDTYFLKTSENDASPENPLSGEETAAVDPELQSDGNSEFSDAATLEQRRAYKIELQKGISLFNRKPSRGIEFLISTKKVGGSPEEVASFLKNTNGLNETVIGDYLGEREEFPLKVMHAYVDSFNFNAMNFGEAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPGSFTSADTAYVLAYSVIMLNTDAHNNMVKEKMTKADFIRNNRGIDDGKDLPDEYLGTLYDQIVRNEIKMNSDSSASQSKQATSINKLLGFDGILNLVSWKQTEEKAVGANGLLIKHIQEQFKAKSGKSESVYHAVTDITILRFMAEVCWGPMLAAFSVTLDQSDDNVATSQCLLGFRHAVHVTAVMGLQTQRDAFVTSMAKFTYLHCAADMKQKNVEAVKAIISIAIEDGDFLQEAWEHIFTCLSRIENLQLLGEGAPPDVSFLTTSNIEAEEKALKSMGLSTLKKKGLQNPAVMAVVRGGSYDSTSLRANSPGPVTPEQINHLISNLNLLDQIGNFELNHVFAHSQSLNGEAIVAFVKALCKVAIAELQAPTDPRVFSLTKLVEVAHYNMNRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIVMQKSNSTEIRELIVRCISQMVLSRVNNVKSGWKSVFMVFTAAAADERKNIVLLAFETMEKIVREYFPYITETETTTFTDCVRCLITFTNSRFNSDVSLNAIAFLRFCAVKLAEGGLVCYEMVGENGSSKSLDAPTPTPTPPDKDDYASYWVPLLAGLSKLTSDPRSPIRKSSLEVLFNILKDHGHLFSRQFWVGVSNTVVFPIFNSLHEKKEVDMNEHDEHSEGSTWDSSTCQVAADCLVDLFISFFSVIRSQLPGVVRILTGLISNPIKGPASTGVTALMRLVGDLANRLTEKEWREIFLAMKEVATLPVPGFIKVLRTMDDVNVPGISRSSNDVDVASDPGLSTDGLDDDDLQTATYIVSRMKSHISMQLLFLQVVTDLYKSHTQPFSSDNISIILDIFSSISAHAQKLNSDTILQKKLQKVCSILDISDPPVVHFENETYQSHLNFLESMLAKNRLLTDSTLIESKLITLCEEILHIYLKCTEMPGQPKETNPALPHWILPLGPERKEELAARTSLVASALRVLSGFERDLFKRYAPQLFPLLVELIRSEHSSGEVQVVLSSIFQSCIGPIIMQ 1711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7715321 7724596 + Carg04116-RA Car19g00635 167602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00635 1711 Pfam Domain of unknown function (DUF1981) 1111 1193 IPR015403 -
Car19g00635 1711 Pfam BIG2 C-terminal domain 1504 1702 IPR046455 -
Car19g00635 1711 ProSiteProfiles SEC7 domain profile. 555 742 IPR000904 GO:0005085|GO:0032012
Car19g00635 1711 Pfam Dimerisation and cyclophilin-binding domain of Mon2 16 205 IPR032629 -
Car19g00635 1711 Pfam Sec7 domain 563 744 IPR000904 GO:0005085|GO:0032012
Car19g00635 1711 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 298 455 IPR032691 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00635 K18442 ARFGEF, BIG; brefeldin A-inhibited guanine nucleotide-exchange protein - csv:101212521 2973.34
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g01430 Car19g00635 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00968 Car-Chr6:7425333 Car19g00635 Car-Chr19:7715321 0 dispersed
Car14g01789 Car-Chr14:13990664 Car19g00635 Car-Chr19:7715321 0 dispersed
Car11g01430 Car-Chr11:11652983 Car19g00635 Car-Chr19:7715321 0 transposed
Car11g01429 Car-Chr11:11646959 Car19g00635 Car-Chr19:7715321 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g315 . . . . . Bpe12g00159 . . . Cmo11g01803 . . . . Sed05g2136 Cpe04g00646 Cpe15g00658 Bhi05g01542 Tan02g0540 Cmetu01g0851 Lac12g0438 Hepe02g0345 . . . . . . . . . . . . . . Csa07g00216 . . . Blo13g00462 . . . . . . . . . Cma11g01317 Cma19g00818 Car11g01430 Car19g00635 . . . . . . . . . . . . . . . . Lsi11g01311 . Chy01g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010065 0 1 1 0 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00635 Car_Chr19 FPKM 1.902299 2.524532 2.439306 2.64087 5.408942 3.804022 5.603765 2.409426 2.463615 2.754816