Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00638 ATGGCTGGCTTCATTTGCGAGGTCGGTTATGTGATTGAGTTCGATATTGGATTGGGAGGAGGAAGTGGTAGGGAGGGAGATGACTATTCTATTGGTATGGTGCATCATTCCATCGAGGATGAAGAAATGGTTGATAGCCCTCCTCTGAGTAGCCTTGGTGGTGGCGCTGGCAGTGGTGAGATATATCTTCCGGAGGGTGATCTTTTGGATCTTGAACCTTATGAAGGAATGGAATTCGAGTCTGAAGAGGCTGCCAAAGCATTCTATAATTCATATGCTCGACGTGTTGGGTTCAGTACTCGTGTCAGCTCGTCCCGTCGGTCTAGGCGCGATGGAGCGATTATACAAAGGCAATTTGTTTGTGCCAAAGAGGGTTTCAGGAATATGAATGAGAAGCGAACTAAAGATAGGGAAATTAAGCGCCCTCGAACCATCACTAGAGTGGGTTGCAAAGCATCCTTGTCTGTAAAGATGCATGATTCTGGGAAATGGGTTGTCTCTGGATTTGTTAGAGAGCATAATCATGAGTTAGTTCCTCCTGATCAGGTGCACTGCTTGCGGTCTCATAGGCAAATATCAGGTCCAGCAAAGACCTTAATTGATACTCTACAGGCTGCTGGGATGGGTCCTCGTAGGATTATGTCGGCACTGATAAAGGAGTATGGAGGAATCAGTAAAGTTGGATTTACTGAGGTTGATTGTCGAAATTATATGAGGAATAATCGCCAAAGGAGCTTAGAAGGAGACATTCAACTGCTTTTGGATTACTTGAGGCAAATGCATTCTGAAAATCCGAACTTCTTCTATGCGGTGCAGGGTGAGGAGGATCAGTGTGTGGGCAATGTCTTTTGGGCCGATCCAAAGGCTCGGATGAACTATACTTACTTTGGGGATACCGTTACATTTGACACTACCTATAGGTCAAACAGATATCGTCTGCCCTTTGCTCCTTTCACCGGGGTGAATCACCATGGACAGCCCGTGTTATTTGGCTGTGCTTTTCTAATAAATGAATCTGAAGCATCATTTAATTGGCTATTTAGAACGTGGCTTTTGGCAATGTCTGGTCGCCCACCTGTGTCAATTACTACCGATCATGATGCAATAATACAGTCAGCCATTACACAAGTTTTCCCGGAGACCCGTCACCGTTTCTGCAAATGGCATATTTTCAAGAAATGCCAGGAGATGCTTTCTCATGTGTTTCTGAAACACCCAAGCTTTGAAGCTGACTTCCACAAATGTGTAAATTTGACCGACTCTATCGAGGAATTTGAGTCCTGCTGGCTGTCACTTGTTGACAGATATGATCTCAGGGATCATGAGTGGCTTCAAACAATTTACTCTGCTCGGAGGCAGTGGGTTCCGGTGTATTTGCGGGATACTTTTTTCGCTGAAATGTCTATTACCCAGCGAAGTGATAGTATGAATTCATATTTTGATGGGTACGTGAATGCTTCGACCAATTTGAGTCAGTTCTTCAAACTGTATGAAAAAGCTTTAGAGAGTCGGAATGAGAAAGAAGTGAAAGCAGATTATGATACAATGAACACTTCCCCTGTTCTAAAAACTCCATCTCCAATGGAAAAACAAGTTTCTGAGCTTTACACCAGGAAGCTGTTCTCAAGATTCCAAGAGGAGTTAGTTGGCACATTAACTTTTATGGCGTCGAAGGCTGATGACGATGGGGAAATTATAACATATCAAGTGGCCAAATTTGGCGAGGATCATAAAGCTCACTATGTGAAATTCAATGTTTTGGAGATGAGAGCAAGTTGTAGTTGCCAGATGTTCGAGTTCTCAGGCCTTCTGTGCGGACATATCTTGGCTGTCTTCAGAGTGACCAATGTTCTTACACTTCCATCTTATTACATATTGAAACGTTGGACAAGAAATGCGAAGAGTAACGTGATGTTGGATGACCATGTGAATGATATCTATAACAACTATCTTGAATCTCATACTGTGAGATACAATACCCTACGCCATGAGGCTTTTAAATTCATCGAGGAAGGAGCAAAGACTGTGGATACGTATAATGTGGCAAAAGATGCCCTTCAAGAGGCTGCAAAAAGGGTTGCTCATACAACGAGGAATGATGGAAAAAATTATACAATCAATGGGCGTATTAAAATGGACCCTGGAAACGACAGAAGCTATACATATCATAGTAGTAGCAGGGATCACGACGAGATATTGAGTAAAAACATGTCGGAGGATGACTTGGACAAGAAAATCAACGAGCTTACCAATGAATTGGAGTGTGCAAATCGGAAGTGCGACGTTTACCGGTCTAACCTTTTTTCAATGCTGAAAGACATTGAGGACCACAAACTGCAATTATCTATTAAAGTGCAGAACATAAAAATTAGTATGAAAGATAGCATTTGA 2391 42.62 MAGFICEVGYVIEFDIGLGGGSGREGDDYSIGMVHHSIEDEEMVDSPPLSSLGGGAGSGEIYLPEGDLLDLEPYEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRTKDREIKRPRTITRVGCKASLSVKMHDSGKWVVSGFVREHNHELVPPDQVHCLRSHRQISGPAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLLLDYLRQMHSENPNFFYAVQGEEDQCVGNVFWADPKARMNYTYFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFNWLFRTWLLAMSGRPPVSITTDHDAIIQSAITQVFPETRHRFCKWHIFKKCQEMLSHVFLKHPSFEADFHKCVNLTDSIEEFESCWLSLVDRYDLRDHEWLQTIYSARRQWVPVYLRDTFFAEMSITQRSDSMNSYFDGYVNASTNLSQFFKLYEKALESRNEKEVKADYDTMNTSPVLKTPSPMEKQVSELYTRKLFSRFQEELVGTLTFMASKADDDGEIITYQVAKFGEDHKAHYVKFNVLEMRASCSCQMFEFSGLLCGHILAVFRVTNVLTLPSYYILKRWTRNAKSNVMLDDHVNDIYNNYLESHTVRYNTLRHEAFKFIEEGAKTVDTYNVAKDALQEAAKRVAHTTRNDGKNYTINGRIKMDPGNDRSYTYHSSSRDHDEILSKNMSEDDLDKKINELTNELECANRKCDVYRSNLFSMLKDIEDHKLQLSIKVQNIKISMKDSI 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7740014 7744213 + Carg04119-RA Car19g00638 167605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00638 796 Pfam SWIM zinc finger 568 614 IPR007527 GO:0008270
Car19g00638 796 MobiDBLite consensus disorder prediction 722 736 - -
Car19g00638 796 MobiDBLite consensus disorder prediction 715 736 - -
Car19g00638 796 ProSiteProfiles Zinc finger SWIM-type profile. 584 616 IPR007527 GO:0008270
Car19g00638 796 Pfam MULE transposase domain 300 393 IPR018289 -
Car19g00638 796 Coils Coil 739 766 - -
Car19g00638 796 Pfam FAR1 DNA-binding domain 88 179 IPR004330 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00638 - - - csv:101218471 1507.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00692 Car-Chr13:8264694 Car19g00638 Car-Chr19:7740014 2.32E-140 dispersed
Car16g00443 Car-Chr16:2803275 Car19g00638 Car-Chr19:7740014 3.22E-146 dispersed
Car17g01248 Car-Chr17:9465982 Car19g00638 Car-Chr19:7740014 5.89E-25 dispersed
Car19g00665 Car-Chr19:7910222 Car19g00638 Car-Chr19:7740014 3.25E-70 dispersed
Car06g01247 Car-Chr6:8989450 Car19g00638 Car-Chr19:7740014 1.53E-16 transposed
Car11g00684 Car-Chr11:3825507 Car19g00638 Car-Chr19:7740014 0 transposed
Car11g00993 Car-Chr11:6814430 Car19g00638 Car-Chr19:7740014 0 transposed
Car11g01433 Car-Chr11:11672743 Car19g00638 Car-Chr19:7740014 0 wgd
Car19g00638 Car-Chr19:7740014 Car02g00188 Car-Chr2:1130124 8.72E-09 wgd
Car19g00638 Car-Chr19:7740014 Car20g00607 Car-Chr20:3408109 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g319 . . . . . . . . Cmo19g00838 Cmo11g01806 . . . . Sed01g0791 . . Bhi05g01538 Tan02g0536 Cmetu02g1725 . Hepe02g0341 . . . . . . . . . . . . . . Csa07g00221 . . . . . . . . . . . . . Cma11g01315 Cma19g00822 . Car19g00638 . . . . . . . . . . . . . . . . . . Chy01g00559 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5287 PF10551 MULE 5.70E-29 CL0219 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00638 Car_Chr19 FPKM 0.911392 0.0 1.874808 2.332969 0.926001 0.543932 0.530859 0.0 0.195961 0.0