Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00641 ATGGAAATTAGCGGCAGTGGAAATGGTACTAGTATGCTGTGGTTCTTCAGGGACAAAGGATTTGATGATGGAAGCATCGATAAGATGTTTAAAAAGTGTAGGCGTTTGGAAGGTATGCAGAATGAAAGAGCTGCTGAAAATTGGGAATATTTGGAAGGAATTGGGATTCAAAAGAGGAAACTCCCTTCTGTTGTTTTCAAATGTCCTAAGATTCTAGTTCTTGGTCTTCAAGAGAAAATTGCTCCCATGGTTGAGTGCCTTGCAACACTCAGCACTAAGCCTCGTGAAATTGCTACAGCTATTGCCAAATTTCCTGGCATTCTTTCCTATAGTGTTGAAGAGAAGCTATGCCCACTTTTGGCTTTCTTTCAAGCTCTGGGTGTCCCTGAAAAGCAGCTTGGAAAGATGATTCTACTCAACCCGAGGCTTATTAGCTACAGCATTGAATCGAAGCTCATTGAAACTGTAGATTTTCTTGCTGGGGTTGGGCTAACGAAGGAGGGGATGATTGGAAAAGTTCTAGTAAAGAATCCATTTCTCATTGGATATAGTGTTCATAAAAGGCTCCGTCCTACTTTCGAGTTTCTGAAATCGATCGGTCTCAGTGAGATGGATCTTCAAGCAGTTGCATTGAAATTTCCAGACGTTTTGTGTAGGGATGTGGACAAAGTTTTGAGACCCAATTTGGATTATCTGAGGAGACGTGGGTTTAAAGATGGAGAAATAGTGTCTTTGGTGACTGGTTATCCTCCTATTTTGATCAAGAGCATTCAACATTCTCTAGAACCTCGGATCAGATTTTTAGTTGAAATAATGGGAAGAACACTGGACGAAGTTGCCGAATATCCCGAGTTTTTTAAGCATGGTTTGAAGAAAAGACTCGAGTTGCGGCATAGATTGTTGAAAGAGAAGACAACAGACTTTACCTTGAGTGAATTGTTGGAATGCAATCAAAAGAAGTTTATGATGAAAATGAGTTTGTTATGA 987 40.22 MEISGSGNGTSMLWFFRDKGFDDGSIDKMFKKCRRLEGMQNERAAENWEYLEGIGIQKRKLPSVVFKCPKILVLGLQEKIAPMVECLATLSTKPREIATAIAKFPGILSYSVEEKLCPLLAFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLAGVGLTKEGMIGKVLVKNPFLIGYSVHKRLRPTFEFLKSIGLSEMDLQAVALKFPDVLCRDVDKVLRPNLDYLRRRGFKDGEIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRTLDEVAEYPEFFKHGLKKRLELRHRLLKEKTTDFTLSELLECNQKKFMMKMSLL 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7752592 7753578 - Carg04122-RA Car19g00641 167608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00641 328 Pfam mTERF 15 321 IPR003690 GO:0003690|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00641 K15032 MTERFD; mTERF domain-containing protein, mitochondrial - csv:101218706 573.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00624 Car-Chr1:3659905 Car19g00641 Car-Chr19:7752592 4.18E-06 dispersed
Car03g00923 Car-Chr3:7262070 Car19g00641 Car-Chr19:7752592 1.22E-11 dispersed
Car09g00906 Car-Chr9:5589151 Car19g00641 Car-Chr19:7752592 4.46E-21 dispersed
Car14g00979 Car-Chr14:7077340 Car19g00641 Car-Chr19:7752592 2.13E-16 dispersed
Car17g01055 Car-Chr17:8250588 Car19g00641 Car-Chr19:7752592 1.32E-08 dispersed
Car19g00641 Car-Chr19:7752592 Car07g00815 Car-Chr7:4316011 2.13E-22 dispersed
Car19g00641 Car-Chr19:7752592 Car19g00510 Car-Chr19:6746795 4.73E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g322 . . . . . . . . Cmo19g00843 . . . . . Sed05g2133 . Cpe15g00664 Bhi05g01534 Tan02g0531 Cmetu11g0650 Lac12g0430 Hepe02g0338 . . Cla02g00320 Cam02g0328 Cec02g0328 Cco02g0332 Clacu02g0318 Cmu02g0317 Cre02g0650 . . Cone3ag1260 Cone10ag1198 . Csa07g00224 . . . . . . . . . . . . . . Cma19g00826 . Car19g00641 . . . . . . . . . Cla02g01049 Cam02g1120 Cec02g1125 Cco02g1158 Clacu02g1106 Cmu02g1066 Cre02g1374 Lsi11g01318 . Chy01g00556 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003040 0 1 1 1 1 2 1 3 2 3 2 2 1 1 1 1 2 2 1 2 2 1 2 2 3 1 2 2 3 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5288 PF02536 mTERF 7.70E-42 No_clan Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00641 Car_Chr19 FPKM 140.280914 142.62764 213.644562 216.100281 2.216494 2.180358 2.539119 463.492706 453.361664 441.934509