Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00649 ATGGGTTATATGTGTGATTTCTGTGGGCAACAAAGGTCGTTTGTTTACTGTCGATCCGATGCTGCAGCTTTGTGCTTATCTTGTGACCGTAATGTTCATTCTGCTAACGCCTTGTCGAGGCGACACTCAAGAACGTTGTTATGTGATCGTTGTCATTCACAAGCAGCATTTGTTAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAACTGTGATTACATGGGGCATAGCTCATCCGCCTCCATTTCATCTCGAAAGAGGCAACCAATCAATTGTTACTCGGACTGCCCGACAGCTGCGGAGCTCTCATCTATCTGGTCATTTGTTCTGGATCTCCCTTCTGGAAGCGATGCTTGCGAGCAAGAATTAGGATTGATGAGCATTGCCGAAAATAGTGCAGTAAACGCCTGGGGCCCTGATGATAAAGCTGGTCAAAATGTATCTGGTGTCGATGAAACCAACGAATTCTCAAGTGGGGATAAATCGATTTGGTTCGGGTCCTCTTCAGCGCCTCAATATTTATCCAAGCCTCACATTATGGACCAACCAATTACTACAGGTGCAACTTCACCCAAGTTGCACTATCCTGGAACAAAAGGTCCTGAATTCGACATTGACGATGACCTCTACGAGAGTTTGAATATGGATGAAGATTTGAATATCGAAAACTATGAAGAACTATTTGGTGTATCCCTCAGTTATTCTGAAGAATTGTTAGAGAATGGTGGTATTGATAGCTTGTTTAGGATCAAAAGCTTAGCTGCTGCTAAATCTGGTTGCGCTGGTGCGACTGATGCAAAGGGGCCGTCAGGTTTAGCTAATAATATGATGCAGCCTGCAAGCAGTAATGCAGCATCAGCAGATTCTGTGATGAGTGCGAAGACTGACCCGATTCTTTGTTATAACAATAAGCAAGAGCATTCCAGTCGATCGTTTTCTGGCATGACTGGAGAGAGTAGCGCAGGCGAACATCAAGACTGTGGAGCTTCATCAATGCTTCTGATGGGAGAGCCTCCATGGTGTTCTATGGCTACTGAGAGTTCGTTCCAATCATCGAATCGTAGCGATGCTGTAATGCGCTACAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTATGCCTCTCGCAAAGTGCGGGCCGATACTCGAAGACGGGTCAAGGGGCGCTTTGTTAAAGCTGGAGAAGCTTATGACTATGATCCGATGAGTCAAACCAGAAGCTACTGA 1236 44.9 MGYMCDFCGQQRSFVYCRSDAAALCLSCDRNVHSANALSRRHSRTLLCDRCHSQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCYSDCPTAAELSSIWSFVLDLPSGSDACEQELGLMSIAENSAVNAWGPDDKAGQNVSGVDETNEFSSGDKSIWFGSSSAPQYLSKPHIMDQPITTGATSPKLHYPGTKGPEFDIDDDLYESLNMDEDLNIENYEELFGVSLSYSEELLENGGIDSLFRIKSLAAAKSGCAGATDAKGPSGLANNMMQPASSNAASADSVMSAKTDPILCYNNKQEHSSRSFSGMTGESSAGEHQDCGASSMLLMGEPPWCSMATESSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPMSQTRSY 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7815952 7821092 + Carg04130-RA Car19g00649 167616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00649 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 411 - -
Car19g00649 411 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Car19g00649 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 411 - -
Car19g00649 411 ProSiteProfiles CCT domain profile. 354 396 IPR010402 GO:0005515
Car19g00649 411 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Car19g00649 411 SMART bboxneu5 4 47 IPR000315 GO:0008270
Car19g00649 411 CDD Bbox1_BBX-like 5 47 - -
Car19g00649 411 Pfam CCT motif 354 396 IPR010402 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g01444 Car19g00649 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car19g00649 Car-Chr19:7815952 Car20g00520 Car-Chr20:2865389 6.72E-60 dispersed
Car11g01444 Car-Chr11:11731118 Car19g00649 Car-Chr19:7815952 0 wgd
Car19g00649 Car-Chr19:7815952 Car20g00602 Car-Chr20:3391655 1.14E-180 wgd
Car19g00649 Car-Chr19:7815952 Car07g00641 Car-Chr7:3251437 5.65E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5289 PF06203 CCT 2.70E-16 CL0281 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00649 - - csv:101216326 738.413