Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car19g00652 | ATGGGCCTCTCCAGTCTTCCAGCTCCATCTGAAGGAGTCCTAAACGCAATTCTCATAAACGCTGCACTATCCATTTCCATCTTCAAATGCATTGTTCGTTTGATCCTTCACATTGTAGGAATCCGTTTCTCATCGCCATCATCCTTAGTCCCATCTACAGATTCCTTTGAAAATTCCTCAGAGTTGGGAGATTCCAACTTTGGCTCCTCTTGGAGTTACCTCGAGATGTTTCGGAACAGATATCCAAGTATTAGGTTTGATAAAGTACAGGGCTCCGAACGTCTCGAACACGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCAGAGATAAATCACTTATCTTGTGGCCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTGGATTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATGTCAGAAGAAGAGAAATCGTGCTTTTGGTGA | 465 | 43.23 | MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSSELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW | 154 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 7829713 | 7830177 | + | Carg04133-RA | Car19g00652 | 167619 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car19g00652 | 154 | Pfam | Ring finger domain | 98 | 141 | IPR001841 | - | |
| Car19g00652 | 154 | ProSiteProfiles | Zinc finger RING-type profile. | 99 | 141 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car19g00652 | Car-Chr19:7829713 | Car20g00604 | Car-Chr20:3399356 | 6.11E-70 | dispersed | |
| Car19g00652 | Car-Chr19:7829713 | Car07g00640 | Car-Chr7:3246844 | 1.88E-72 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car19g00652 | K16285 | - | csv:101215843 | 266.929 |