Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00664 ATGTCTTCAATGACAACAAATAAGACTGTATGTTCTAAGACCAGTGGCGACCGATCAAAACATGGAGCTCATGTGGTTGCACAAACTTCAATTGATGCAAAGCTTCAAGTAGACTTTGAAGGTTCTGAAAGGTTGTTTGATTACTCTGCGTCGGTTGATGTCAACGTCGCAAGTTCGAGTAGCAATGTTCATGCCACCACTGTACAATCATACCTTCAGAACATTCAGAGAGGAAGTCTAGTTCAACCATTTGGTTGTATGATTGCTGTGGATGGGGAAAACTTGTCTGTTCTTGCATATAGTGAAAATGCCCCTGAGATGTTGGACTTGGCCCCACATGCTGTGCCGAACATCGAGCAGCAAGAAGCTCTAACTTTTGGAACGGATGTACGAACGCTTTTTCGTTCGCCAGGAGCTGCAGCGTTACAGAAAGCAGCTGATTTTAAGGAAGTTAATCTTCTTAATCCTATACTAGTCCATTGTAAAACTTCTGGTAAACCGTTTTATGCGATTTTGCATCGAGTAGACGTGGGATTGATTATAGATCTGGAGCCAGTGAATCCAGCTGATGTGCCAGTGACTGCAGCTGGGGCATTGAAATCTTATAAGTTAGCAGCTAAAGCCATCCCAAAATTGCAGTCCTTGCCGAGTGGGAATATATCTCTTTTATGTGAGGTATTGGCTAAAGAGGTTAGCGATTTGACAGGTTACGATCGAGTAATGGTGTATAAATTCCATGATGATGAGCATGGAGAAGTTGTAGCTGAGTGCTGTCGATCGGACTTAGAACCATATCTTGGCTTGCACTACCCAGCTACTGACATACCTCAAGCTTCAAGGTTCCTTTTTTTGAAGAATAAAGTTAGGATGATTTGTGATTGTTTGGCACCTCCAGTTAAGGTGCTTCAAGACAGGAGATTGACTCAGCCATTGAGTCTATGTGGGTCTGCATTGAGGGCTCCTCACGGTTGTCATGCTCGGTATATGATGAATATGGGCTCTATTGCATCTCTCGTGATGTCTATTACGATCAATGAGAGTGATAGCGAATCCGAGAATGATCAAGAAAAGGATAGAAAGTTGTGGGGTTTAGTAGTTTGTCATCACACAAGTCCTAGGTTTGTGCCATTTCCTTTGAGATATGCTTGTGAATTCTTGATTCAAGTTTTTGGTATACAGATTAATAAAGAAGTGGAGTTGCAAACTCAGTTGAAGGAGAAACATATATTGCGAATTCAAACCGTTCTTTGTGATATGCTGCTAAGAGATACTCCGGTAGGAATCGTTACCCAATCTCCCAATATTATGGATCTTGTTAAGTGTGATGGTGCTGCCTTATATTTCAGAAAGAAATTTTGGTTAGTTGGAGTCACCCCTTCAGAGGCACAAATTAGGAATATAGCTGAATGGCTTCTCGAAGACCATAGCGGAAGCGCAGGTTTAAGTACCGATAGCCTAGTTGAAGCTGGTTTCTATGGTGCTTCTGCTCTTGGTGATGAGGTGTGTGGAATGGCTGCTGTTAGGATCACCTCTAAGGATTTCCTTTTCTGGTTTCGGTCACATATGGCTAAAGAAATCAGGTGGGGTGGTGCAAAACATGACCCCGGTGACCAGGACGATGGAAGGAATATGCATCCGAGATCATCATTCAAGGCTTTCCTGGAAGTGGTGAAGCGGCGTAGTCAACCTTGGGAAGATGTGGAAATGGACGCCATCCATTCGCTGCAATTAATATTACGAGGTTCTTTACAAGATGAAGAAGTTGAAGAAGAATGCAAGGTGATTACAAACGTCCCGTTAGTCGATGAGAAGACACAACAGTTGGATGAACTGCGTGTCATCACAAACGAGATGGTTCGCTTGATCGAGACAGCTGCAGTGCCTATCTTGGCTGTAGATGTTTTCGGCAAGATCAATGGTTGGAACTCGAAAGCCACTGAGCTTACAGGATTGGCTATCCAGCAAGCCATTGGCATGCCCTTAGTTGATTGTCTGGTGAATGATTCTATTAAGGTGGTAAAGAAAATGCTGTCCTTGGCCGTTCAAGGTATTGAAGAGAAGAACATCGAAATCAAACTCAAAACATTTGGAATTCCGGGACACGATGGTCCAGTGATCTTAGAAGTTAATTCGTGCTGTAGCCGAGACCTAAACAATAATGTTGTAGGAGTATATTTTATAGGGCAGGATGTTACAAAGAAGAAACTGATAATGAACCAATACACGCAAATCCAAGGCGATTACACGGGGATTATGCGAAATCCATCTGCACTTATTCCTCCGATTTTCATGACCGATGACGATGGCCGGTGCTTGGAATGGAATGATGCAATGGAAAAGTTATCTGGTTTTAGGAGGGTAGAGATGACAAATAGGATGCTTCTTGGGGAGGTTTTCACGCTCGAAAGCTTCGGCTGTCGTGTCAAAGATCAGACATTGACCAAGCTTAGGATACTACTGCATAGAGTAATTTCGGGTCAGGATACAGAGAAATTTTTGTTTAAGTTCTGTGATCGTGAAGGAAATTACGTTGAAACACTGCTCACTGCAAGCAAAAGGACTGATTCGGAGGGTAAGATCACTGGGGTCGTCTTCTTCTTGCACGTGGCTAGCTCGGAACTAAAATATGCCTTGGAGATGCAACGGATGTCAGAACAAGCTACAGCTGATAATCTCCATAAGTTGGCATATCTACGCCAAGAAATTCGAAAACCACTCGACGGAATTACATTTATGCAGAATCTAATGGGTTCATCGGAGTTGAACGAAGAGCAAAAGCGGCTACTTAAATCGAACACTTTGAGTCTGGAACAATTATACAAGATTGTACATGATACTGATATCCAGAGTATTGAGGAGTGTTACATAGAAACTAACTGTAGGGAATTCAACCTTGGAGATGTTCTTGACGTCGTAATGAATCAAACCACGATTTTGAGCCGAGACCGCCAGGTGAAGATCATTTGTGAATCACCTGCTGATGTATCATCTCTGCACTTATATGGAGATAACATGAGGCTACAGCAGGTGCTCTCTGAGTTCTTGACTAACACACTTCTCTTCACTTGCAAAGAATCATCCATCGTCTTCCGAACAACTCCAAGGAAGGAGCGTATCGGGAAGGGAATCCACATTCTTCATCTTGAATTCAGGATCATTCATCCGGTTCCTGGAATTCCTGCACACTTAATCCAAGAGATGTTTGATGACAACAATGATAGCTCAAAGGAAGGTCTTGGCCTATACATCAGCCAGAAGCTTGTGAAGATAATGAATGGCACTGTACAGTATATCCGAGAGGCCGAGACCTCGTCATTCATCATCCTCATAGAATTCCCCTTGGTCGAGCATATTGCTTAA 3360 42.95 MSSMTTNKTVCSKTSGDRSKHGAHVVAQTSIDAKLQVDFEGSERLFDYSASVDVNVASSSSNVHATTVQSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGTDVRTLFRSPGAAALQKAADFKEVNLLNPILVHCKTSGKPFYAILHRVDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAIPKLQSLPSGNISLLCEVLAKEVSDLTGYDRVMVYKFHDDEHGEVVAECCRSDLEPYLGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQDRRLTQPLSLCGSALRAPHGCHARYMMNMGSIASLVMSITINESDSESENDQEKDRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQTQLKEKHILRIQTVLCDMLLRDTPVGIVTQSPNIMDLVKCDGAALYFRKKFWLVGVTPSEAQIRNIAEWLLEDHSGSAGLSTDSLVEAGFYGASALGDEVCGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPGDQDDGRNMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLQDEEVEEECKVITNVPLVDEKTQQLDELRVITNEMVRLIETAAVPILAVDVFGKINGWNSKATELTGLAIQQAIGMPLVDCLVNDSIKVVKKMLSLAVQGIEEKNIEIKLKTFGIPGHDGPVILEVNSCCSRDLNNNVVGVYFIGQDVTKKKLIMNQYTQIQGDYTGIMRNPSALIPPIFMTDDDGRCLEWNDAMEKLSGFRRVEMTNRMLLGEVFTLESFGCRVKDQTLTKLRILLHRVISGQDTEKFLFKFCDREGNYVETLLTASKRTDSEGKITGVVFFLHVASSELKYALEMQRMSEQATADNLHKLAYLRQEIRKPLDGITFMQNLMGSSELNEEQKRLLKSNTLSLEQLYKIVHDTDIQSIEECYIETNCREFNLGDVLDVVMNQTTILSRDRQVKIICESPADVSSLHLYGDNMRLQQVLSEFLTNTLLFTCKESSIVFRTTPRKERIGKGIHILHLEFRIIHPVPGIPAHLIQEMFDDNNDSSKEGLGLYISQKLVKIMNGTVQYIREAETSSFIILIEFPLVEHIA 1119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7904045 7908476 + Carg04145-RA Car19g00664 167631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00664 1119 Pfam PAS fold 71 186 IPR013654 GO:0006355
Car19g00664 1119 ProSiteProfiles PAS repeat profile. 747 799 IPR000014 -
Car19g00664 1119 ProSiteProfiles PAS repeat profile. 614 684 IPR000014 -
Car19g00664 1119 Pfam GAF domain 220 398 IPR003018 GO:0005515
Car19g00664 1119 MobiDBLite consensus disorder prediction 1 23 - -
Car19g00664 1119 ProSiteProfiles Histidine kinase domain profile. 897 1116 IPR005467 -
Car19g00664 1119 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Car19g00664 1119 Pfam PAS fold 757 868 IPR013767 GO:0006355
Car19g00664 1119 Pfam PAS fold 617 731 IPR013767 GO:0006355
Car19g00664 1119 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Car19g00664 1119 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1002 1108 IPR003594 -
Car19g00664 1119 Pfam Phytochrome region 411 585 IPR013515 GO:0006355|GO:0009584
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00833 Car-Chr5:8212317 Car19g00664 Car-Chr19:7904045 1.82E-11 dispersed
Car12g00675 Car-Chr12:4646763 Car19g00664 Car-Chr19:7904045 0 dispersed
Car18g00423 Car-Chr18:2652153 Car19g00664 Car-Chr19:7904045 0 dispersed
Car19g00664 Car-Chr19:7904045 Car05g00695 Car-Chr5:4699487 7.55E-08 dispersed
Car19g00664 Car-Chr19:7904045 Car14g01399 Car-Chr14:11804661 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00664 - - csv:101211915 2021.51