Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00707 ATGGACGCCGCCCCTTCCCCTCCTCCTCCTCCACCACCACCACCACCTCCTCCTCCTCCGCCCCCTCCTCCTCCGCCCTCCTACCGGCTCCTCCTTGACGAGATGAACTTCTTCCCCGCCGATGACAAATCCCGCGTCCTCCTCGACTCCAGACTCGCCTCCCGCAATCGCAGTCCCACCAAACTCGACTTCAACGTTAACACAGGCTTGAATCTCTTGACCACCAATTCAAGTAGCGATCAATCCATGGTGGATGATGGAGTTTCTCCAAACCCAGAAGATAAAAGAGCCAAAAACGAGCGAGCAGTTCTTCAAGCTGAATTGGAGAGGCAAAAATCAGAGAATCTAAGATTAAAGGACATGTTAAATCAAGTGACGTCCAATTACCAAGCGCTACAGATGCACCTTGCAACCCTAATTCAAACCCAGAAGGCGGCCGACGTTGCCGATCCGATTGAGGAAAAGTCAGCCGCCGCCCAAGAAAAGGTCAGACACGGCGGCGGATGTAATACTAATAAGTTGGTCCCAAGGCAATTTATGGATCTTGGATTGGCCACGAATGCCGACACCGATGATCTCTCGATGTCATCCGACGGAAGGAGTGGAGAGCAGTCACGATCTCCGGTTACAACCGGAGAAGTCGCGTCGTCCAAACGACATAGCCCCGACCAAGCCTCGAATTGGAGTTCCAATAATAATAATAAGGTTCCCAAATTAGGTTCTTCTTCTTCCTCTTCTTCGGCTAAAGATGCAGATCAAACTGAATCTACTATGAGAAAGGCTCGAGTCTCAGTTCGAGCTAGATCCGAAGCTCCCATGATCACTGACGGATGTCAATGGAGAAAATACGGGCAAAAAATGGCGAAGGGAAACCCTTGTCCGCGAGCTTACTACCGGTGCACCATGGCGGCCGGCTGCCCAGTTAGAAAACAAGTTCAAAGATGTGCGGAGGACAAAACAATTTTGATAACAACGTACGAAGGAAACCACAACCATCCATTACCCACTCCATGCATCCCATCCTCCATGTTATCTCATATATTAAAATTTTTAATATTGTTAAAATAA 1068 49.25 MDAAPSPPPPPPPPPPPPPPPPPPPPSYRLLLDEMNFFPADDKSRVLLDSRLASRNRSPTKLDFNVNTGLNLLTTNSSSDQSMVDDGVSPNPEDKRAKNERAVLQAELERQKSENLRLKDMLNQVTSNYQALQMHLATLIQTQKAADVADPIEEKSAAAQEKVRHGGGCNTNKLVPRQFMDLGLATNADTDDLSMSSDGRSGEQSRSPVTTGEVASSKRHSPDQASNWSSNNNNKVPKLGSSSSSSSAKDADQTESTMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPTPCIPSSMLSHILKFLILLK 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8146244 8147893 + Carg19164-RA Car19g00707 167674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00707 355 MobiDBLite consensus disorder prediction 189 252 - -
Car19g00707 355 Pfam WRKY DNA -binding domain 276 333 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car19g00707 355 MobiDBLite consensus disorder prediction 1 30 - -
Car19g00707 355 ProSiteProfiles WRKY domain profile. 269 335 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car19g00707 355 MobiDBLite consensus disorder prediction 74 98 - -
Car19g00707 355 MobiDBLite consensus disorder prediction 188 268 - -
Car19g00707 355 Coils Coil 94 128 - -
Car19g00707 355 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g01502 Car19g00707 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00329 Car-Chr16:2017973 Car19g00707 Car-Chr19:8146244 1.87E-42 dispersed
Car19g00707 Car-Chr19:8146244 Car01g00161 Car-Chr1:824238 9.65E-27 dispersed
Car11g01502 Car-Chr11:12089406 Car19g00707 Car-Chr19:8146244 6.70E-158 wgd
Car19g00707 Car-Chr19:8146244 Car03g00498 Car-Chr3:5123695 3.51E-65 wgd
Car19g00707 Car-Chr19:8146244 Car07g00275 Car-Chr7:1454524 9.12E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5294 PF03106 WRKY 1.30E-24 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00707 - - cpep:111811775 573.933