Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00708 ATGGCCTGGACCCGACTAGCTGCCGTCGGCCACGGCTCCTTCGCCACCGTCTACCTCGCTGCTTCCTCATCTTCCGGCGACCTCTTCGCTGTCAAGTCCGCCGAGCTTCTCAATTCGGACTTTCTTGAAACAGAGCAGAGGATTCTTTCTTCGCTGTCCCACCCTTCAATTGTGGGCTACAAGGGATTCGACGTAACGACAGAAAATGGGAAGCTTATGTATAATCTCTTCATGGAGTACGCCGCTGGTGGCTCTCTCGCCGACGAAATCGTTCGGCGTGGCGGCCGGATTAAGGAGGTGACAGCGGCGTTTTACACGCGTCAAATTGTCAGAGGATTGGAGTACTTGCACAAGCGGGGTTTGGTGCATTGTGATGTCAAAGCTAGGAACATTTTAATCGGTGCAGATGGTTTGAAGATCGCTGATTTCGGATGCTCCAAATGGGTTCGTGAGTCGCCGGCAGCGGTCTGCGGAACGCCGATGTTTATGGCACCAGAGGTGGCGCGTGGGGAAACACAGGGGATTTCCTCTGACATATGGGCACTCGGGTGTACTTTAATCGAAATGGTGTCAGGCGCCCCGCCGTGGCCTACCGCCGGAGACCCAGTTTCGACGCTGTACCGGATCGCATATTCCGGCGACTCACCGGAAATTCCGAGCTTTTTATCGGAGAAAGCGAAGGATTTTTTAGGGAAATGCTTGAGAAGAAACCCGACAGAACGGTGGAGTGCGAATCAACTTCTTAAACATCCATTTTTGGGGGAACTGAGTTTTGGGTTCGAGATAATCAAGGAATTACATTCAGATTTCGAATCTCCGACGAGTATTTTGGATCAAGGCCCTTGGAACTCGTTAGAAGAAGGGTCGCAAACTCTGTTGAAAACAGAGACATGGGAGGACGACAGAATCAAATGGCTGTCGATGTTTTCAGGGGAAATCAAATGGGAAATGAGAGATGATAATTGGATCACAATCCGAAGCTGTGTTAATGATGAAAATTGA 1002 50.5 MAWTRLAAVGHGSFATVYLAASSSSGDLFAVKSAELLNSDFLETEQRILSSLSHPSIVGYKGFDVTTENGKLMYNLFMEYAAGGSLADEIVRRGGRIKEVTAAFYTRQIVRGLEYLHKRGLVHCDVKARNILIGADGLKIADFGCSKWVRESPAAVCGTPMFMAPEVARGETQGISSDIWALGCTLIEMVSGAPPWPTAGDPVSTLYRIAYSGDSPEIPSFLSEKAKDFLGKCLRRNPTERWSANQLLKHPFLGELSFGFEIIKELHSDFESPTSILDQGPWNSLEEGSQTLLKTETWEDDRIKWLSMFSGEIKWEMRDDNWITIRSCVNDEN 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8148277 8149278 + Carg19165-RA Car19g00708 167675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00708 333 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Car19g00708 333 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car19g00708 333 Pfam Protein kinase domain 5 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car19g00708 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car19g00708 Car20g00544 CCT
Car02g00150 Car19g00708 CCT
Car19g00708 Car20g00544 ECH
Car02g00150 Car19g00708 ECH
Car11g01503 Car19g00708 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00618 Car-Chr1:3627290 Car19g00708 Car-Chr19:8148277 1.14E-66 transposed
Car11g01503 Car-Chr11:12119711 Car19g00708 Car-Chr19:8148277 0 wgd
Car19g00708 Car-Chr19:8148277 Car02g00150 Car-Chr2:851898 4.11E-122 wgd
Car19g00708 Car-Chr19:8148277 Car20g00544 Car-Chr20:2991302 2.99E-127 wgd
Car19g00708 Car-Chr19:8148277 Car03g00496 Car-Chr3:5114316 2.70E-102 wgd
Car19g00708 Car-Chr19:8148277 Car07g00274 Car-Chr7:1447122 2.68E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89572 PF00069 Pkinase 3.10E-59 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00708 K20716 - csv:101205351 534.258