Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00719 ATGCCAGCCGGAATGATGATTCCAGCGAGAAACACGGCGCCGATGATCGGAAGGAATGGAAGTGTTGGGATTTTTGGGTCTCCGGCGAGTCTTCTTCTTGGTCAGGGGAGTATAATGGAGGGAGGAGGGCAGGTAGAGGGAGTGGAATTTTCAGAGAGCGATTTTGGGAGAATGAGAGAAGGAGAGGAGTTTGAGAGTGCAACAAAATCAAGCAGTGAGAACCAGGAGGTGGGTTCTGGTGATGACCTTGACCATCAACGACCCAAAAAGAAGCGTTACCACCGCCATACTCAGAACCAGATCCAACAAATGGAGGCGTTCTTCAAGGAATGTCCTCACCCAGATGATAAGCAGAGGAAGGAGCTGAGTAGGGAGTTGGGTTTGGAGCCATTGCAAGTCAAGTTTTGGTTCCAAAACAAGAGAACTCAGATGAAGACCCATCATGAGCGACATGAGAACACCCAGCTTCGAACAGAAAATGAGAAGCTTCGAGCTGATAATATGAGGTACAGAGAAGCCCTCGGTAATGCTACGTGTCCTAATTGTGGAGGCCCCACCGCCATTGGAGAGATGTCCTTTGACGAACATCATCTCAGGCTTGAAAATGCCCGCTTGAGAGAAGAGATCGATCGCATCTCAGCCATAGCAGCAAAATACGTAGGAAAGCCAGTATCGAGCTACCCGCTTCTTTCCACACCAATGACATCAAGTCCTCTAGAACTTGGAATTGGAAGCTATGGCGGCCACAATTCAGGCCTCGGAGCTGGTGGTGGGGACATGTACGGGGCGGTGGACCTTCTGAGGACTATAAGCGCGCCATCGGAGGCTGACAAGCCCATAATCATCGAGCTTGCAGTTGCAGCCATGGAGGAGCTGGTTCGAATGGCTCAGATGGGTGAGCCCTTGTGGATGACTGCACTCGATGGCTCCACGGCTGTACTTAACGAAGATGAATACGTTAGAACCTTCCCTAGAGGAATTGGACCTAAGCCCTCTGGGTTTAGCTGTGAAGCTTCTCGTGCCACTGCTGTTGTCATTATGAACCATATTAGCCTCGTTGAGATGCTCATGGATGTGAATCAGTGGTCAACCGTATTCAGTGGGATTGTGTCAAGAGCTATGACATTAGAAGTATTGTCAACCGGCGTTGCCGGAAACTACAACGGAGCATTACAAGTGATGACATCGGAATTGCAAGTGCCTTCGCCACTCGTTCCGACTCGGGAGAGCTATTTCGTTCGGTACTGTAAACAGCACGGCGAGGGAACTTGGGCTGTGGTCGACGTTTCCTTGGACAATTTACGCCCGACTCCGGCGCTTAGATGCAGGAGAAGGCCATCCGGTTGTTTAATCCAAGACATGCCCAATGGCTATTCTAAGGTTACGTGGGTTGAGCATGTTGAGGTGGATGATCGCGGGGTGCACAGTTTGTACAACCAGCTGGTTAGGTCTGGCCATGCGTTCGGTGCTAAGCGTTGGATTGCGACGTTGGATCGTCAGTGTGAAAGGCTGGCCAGCGCTATGGCCACAAGTATTCCTACCGGTGATGCTGGTGTGATAACCAATCAAGAAGGAAGAAAGAGCATGTTGAAGCTAGCCGAGAGAATGGTGATGAGCTTTTGCGGTGGAGTGAGCGCGTCCACCACACACACATGGACAACTCTGTCGGGAACTGGAGCGGATGATGTTCGAGTTATGACTAGAAAGAGTGTTGACGATCCCGGCAGACCACCTGGCATTGTCCTTAGCGCCGCCACTTCATTTTGGCTTCCTGTTCCTCCCAAAAGAGTGTTTGATTTTCTCAGAGATGAAAATTCTCGTAATGAGTGGGATATTCTTTCGAATGGTGGAATTGTGCAAGAAATGGCTCACATTGCCAACGGCCGTGACACGGGAAACTGTGTTTCATTGCTACGAGTAAACAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGCAGCACAGATGAAACAGCCTCGTTTGTGGTGTATGCGCCGGTGGACATTGTGGCCATCAACGTGGTGCTAAACGGTGGAGATCCCGATTATGTCGCGCTTCTCCCGTCTGGATTTGCCATTCTTCCCGACGGAAGCACCACGTCGGACGGCGGCGCTAATGGCGTGGCCGAACATGGGTCCGGCGGGTCGCTTTTAACAGTTGCATTTCAGATTTTGGTGGACTCGGTTCCGACAGCTAAACTTTCTCTTGGGTCAGTTGCAACAGTCAACAATCTGATTGCCTGTACCGTTGAGAGGATCAAAGCCTCTTTGTCATGCGAGAATCAGTGA 2298 50.44 MPAGMMIPARNTAPMIGRNGSVGIFGSPASLLLGQGSIMEGGGQVEGVEFSESDFGRMREGEEFESATKSSSENQEVGSGDDLDHQRPKKKRYHRHTQNQIQQMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTHHERHENTQLRTENEKLRADNMRYREALGNATCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVSSYPLLSTPMTSSPLELGIGSYGGHNSGLGAGGGDMYGAVDLLRTISAPSEADKPIIIELAVAAMEELVRMAQMGEPLWMTALDGSTAVLNEDEYVRTFPRGIGPKPSGFSCEASRATAVVIMNHISLVEMLMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSELQVPSPLVPTRESYFVRYCKQHGEGTWAVVDVSLDNLRPTPALRCRRRPSGCLIQDMPNGYSKVTWVEHVEVDDRGVHSLYNQLVRSGHAFGAKRWIATLDRQCERLASAMATSIPTGDAGVITNQEGRKSMLKLAERMVMSFCGGVSASTTHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGIVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESSTDETASFVVYAPVDIVAINVVLNGGDPDYVALLPSGFAILPDGSTTSDGGANGVAEHGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCENQ 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8221874 8226375 + Carg19176-RA Car19g00719 167686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00719 765 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Car19g00719 765 Pfam START domain 284 503 IPR002913 GO:0008289
Car19g00719 765 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Car19g00719 765 MobiDBLite consensus disorder prediction 52 69 - -
Car19g00719 765 MobiDBLite consensus disorder prediction 51 98 - -
Car19g00719 765 ProSiteProfiles START domain profile. 274 506 IPR002913 GO:0008289
Car19g00719 765 Coils Coil 153 173 - -
Car19g00719 765 Pfam Homeodomain 90 145 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car19g00719 Car20g00526 CCT
Car02g00137 Car19g00719 CCT
Car19g00719 Car20g00526 ECH
Car02g00137 Car19g00719 ECH
Car11g01520 Car19g00719 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00693 Car-Chr1:4139304 Car19g00719 Car-Chr19:8221874 0 dispersed
Car14g01153 Car-Chr14:10146694 Car19g00719 Car-Chr19:8221874 2.72E-90 dispersed
Car16g00556 Car-Chr16:3518734 Car19g00719 Car-Chr19:8221874 3.79E-92 dispersed
Car18g01138 Car-Chr18:11310355 Car19g00719 Car-Chr19:8221874 0 dispersed
Car19g00175 Car-Chr19:1586106 Car19g00719 Car-Chr19:8221874 0 dispersed
Car11g01520 Car-Chr11:12241544 Car19g00719 Car-Chr19:8221874 0 wgd
Car13g00584 Car-Chr13:7664985 Car19g00719 Car-Chr19:8221874 0 wgd
Car19g00719 Car-Chr19:8221874 Car02g00137 Car-Chr2:798512 0 wgd
Car19g00719 Car-Chr19:8221874 Car20g00526 Car-Chr20:2899070 0 wgd
Car19g00719 Car-Chr19:8221874 Car03g00472 Car-Chr3:5043138 0 wgd
Car19g00719 Car-Chr19:8221874 Car07g00253 Car-Chr7:1378530 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5296 PF01852 START 7.90E-59 CL0209 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00719 K09338 - csv:101219415 1362.44