Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00789 ATGGTTGCCAAGGAAAAATCCGCCGCCAAGAGCCTCCCTTCGCTCTGCAACAACACCTATGCTAAAGAACTCCATTTCCGAGGCGTTCGAAAGAGGCCTTGGGGCCGATATGCCGCCGAGATCCGAGATCCCGGCAAGAAGAGCCGCGTCTGGCTCGGTACCTTCGACACGGCAGAGGAAGCGGCGCGTGCGTACGACACCGCCGCCCGTCAGTTCCGCGGCGCTAAAGCCAAAACCAATTTCCCTCTGGAGGAGGAGCTGATCGACGTTTCTCCTCAGAAGATTAATCAAAGCCCTAGCCCTAGTAGTACTGTCGAGTCCTCTTCCTCCTCCAGCCAAGAAAAAACCCCCTCGCCGGAAATCGCCCGGAACTACGGCGCGACTGTCGGTGTCGGACGAACTTCTCCCTTCCTTCAGCCTCAGTTTTTGCATCAGGTCGGTTGCAATGTCTCCGCCGCCGCCGCCGGCAGCGGCGGCGGCGTTCGTCCTGTTTTGTTTATGGACGCTTTTGGTAGACCGGAGTTCGTGGCTCATGGCTACCCCATACGATTCGATCCGGCGACGGTGGATTTGACTGCTAGGTTCTCCGGCGGGTCCCACAGCGATTCGGACTCATCGTCGGTTGTTGACTGCCGGCCGGTGAAGGAAATTCTGAATCTCGATCTCAATCTCGCTCCTCCGGTGGACGCTTGA 693 58.3 MVAKEKSAAKSLPSLCNNTYAKELHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAARQFRGAKAKTNFPLEEELIDVSPQKINQSPSPSSTVESSSSSSQEKTPSPEIARNYGATVGVGRTSPFLQPQFLHQVGCNVSAAAAGSGGGVRPVLFMDAFGRPEFVAHGYPIRFDPATVDLTARFSGGSHSDSDSSSVVDCRPVKEILNLDLNLAPPVDA 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8566593 8567285 - Carg19247-RA Car19g00789 167756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00789 230 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Car19g00789 230 MobiDBLite consensus disorder prediction 91 119 - -
Car19g00789 230 MobiDBLite consensus disorder prediction 88 121 - -
Car19g00789 230 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00048 Car19g00789 CCT
Car19g00789 Car20g00207 CCT
Car02g00048 Car19g00789 ECH
Car19g00789 Car20g00207 ECH
Car11g01596 Car19g00789 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car19g00789 Car-Chr19:8566593 Car20g00207 Car-Chr20:1191194 1.15E-33 dispersed
Car11g01596 Car-Chr11:12622845 Car19g00789 Car-Chr19:8566593 1.64E-98 wgd
Car13g00514 Car-Chr13:7219451 Car19g00789 Car-Chr19:8566593 1.87E-30 wgd
Car18g00363 Car-Chr18:2243213 Car19g00789 Car-Chr19:8566593 8.54E-31 wgd
Car19g00789 Car-Chr19:8566593 Car07g00193 Car-Chr7:1089981 1.09E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5306 PF00847 AP2 1.40E-14 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00789 K09286 - csv:101210659 291.967