Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00794 ATGGACCGCCGTGTTCGTACGAACCCATTTGTCTCAGAGCAAGAAGATCCAGAAGCCACGTCGGACGACGGCCTACCGGAGTCACCCTCCGACGATAATGATTCAAAACCCGCCGCCGGCCCCCCTCCCAAAAAGAGTAGAAGGGGAGTTCAGAAGAGAGTAGTGTCCGTACCGATCGGCGACGTGGAGGGATCTAAGAGCAAAGGGGAAGCATATCCACCGTCCGATTCATGGGCATGGAGGAAATACGGCCAAAAGCCAATCAAAGGCTCTCCTTATCCCAGGGGATATTATCGATGTAGTAGCTCCAAGGGCTGCCCAGCCAGAAAGCAAGTAGAGAGAAGCCGTGTGGACCCCACCAAGCTCGTTATTACCTACGCTTTCGACCACAACCACCAACTCCCGGCCACCAAATCTCACCACCACCACCACAATTCCTCGCCGTCCTCCGCCGCGATCGCCGCTGCGCCCGACTCCTCATCCCCGGGAAGCACGACGACGTCCTCGTCAACTTCCTCCGGCGACCATACGAACACCGATCCCTCATTGTCGGCAGCGGCGAAATTCGAGGAGGCGGCTGCGGTTTTCGCGAGTCAGCCAGAACTAGAACTCGGCGGCGACTCGCTGATGATAAAACCATGCATCGGCGATTTTGGATGGTTGGCTGACGTGGCATACGATAGAATCCTGGAGGGCCCAATTTGCGGGGGAGGCGACATATTCGACGACGCCGATGTAATGGTTTTGTCCACAAGAGGAAATGACGAGGACGAATCGTTATTTGCTGACCTTGGGGAGTTACCTGAAGGCTCTATGGTTTTTGGGCGACGGCGAGCGGTCCAACCGGACGGACCGAACCGGACACGTGGCAGAGTATTAGACTGCTAG 888 56.53 MDRRVRTNPFVSEQEDPEATSDDGLPESPSDDNDSKPAAGPPPKKSRRGVQKRVVSVPIGDVEGSKSKGEAYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLVITYAFDHNHQLPATKSHHHHHNSSPSSAAIAAAPDSSSPGSTTTSSSTSSGDHTNTDPSLSAAAKFEEAAAVFASQPELELGGDSLMIKPCIGDFGWLADVAYDRILEGPICGGGDIFDDADVMVLSTRGNDEDESLFADLGELPEGSMVFGRRRAVQPDGPNRTRGRVLDC 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8597545 8599601 - Carg19252-RA Car19g00794 167761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00794 295 MobiDBLite consensus disorder prediction 1 115 - -
Car19g00794 295 Pfam WRKY DNA -binding domain 76 133 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car19g00794 295 Gene3D WRKY domain 62 136 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car19g00794 295 ProSiteProfiles WRKY domain profile. 75 135 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car19g00794 295 PANTHER OS01G0750100 PROTEIN 20 279 - -
Car19g00794 295 MobiDBLite consensus disorder prediction 146 182 - -
Car19g00794 295 SMART WRKY_cls 74 134 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car19g00794 295 MobiDBLite consensus disorder prediction 136 182 - -
Car19g00794 295 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 20 279 IPR044810 GO:0003700
Car19g00794 295 SUPERFAMILY WRKY DNA-binding domain 70 135 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00494 Car-Chr18:3548231 Car19g00794 Car-Chr19:8597545 2.64E-34 dispersed
Car19g00794 Car-Chr19:8597545 Car06g00922 Car-Chr6:7155072 3.88E-29 dispersed
Car11g01591 Car-Chr11:12599502 Car19g00794 Car-Chr19:8597545 1.52E-148 wgd
Car13g00468 Car-Chr13:6993847 Car19g00794 Car-Chr19:8597545 3.66E-46 wgd
Car18g00406 Car-Chr18:2515409 Car19g00794 Car-Chr19:8597545 8.64E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5307 PF03106 WRKY 1.10E-24 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00794 - - csv:101209422 466.848