Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00800 ATGGAAGTTGAAGACGATCACAGAAGAAAAGAGCTACTCGTTCTTGTGGTAATCGTTGTACTTGCTTCCCTCTCTCTCGTTTCCTTGCTCGTCGCTTTCAGCTATTACTGCTATATTAGCCACAAGGTCTCCAAGCGCCTCAAGATCCGCAAAAGGGTTGATCTTGAGGACGAAGGTAGTTTTGAAAATGTTGAAAAAAATTCCACTGAGAAAGGCCTCCAATTGTTCACCTTCAAGCAGCTATACTCAGCGACCGGTGGTTTCAGCAAGTCAAATGTGGTTGGGCATGGTAGCTTTGGGTGTGTATATCGGGGAGTCCTTAACGATGGGCGAAAGGTTGCGATTAAGCTTATGGATCAAGCAGGGAAGCAGGGAGAGGAGGAATTTAAAGTGGAGGTGGACTTGTTAAGTCGGCTTCATTCGCCATATTTGTTGGCATTGCTTGGGTATTGCTCAGATAACAATCATAAAGTGCTGGTATACGAGTTCATGGTGAATGGCGGTCTGCAAGAACATTTATACCCTGTTAGGAGATCAAATTCCGTCAGCGTTAAGTTGGACTGGGAAACACGGCTGAGAGTTTCTCTGGAAGCTGCCAAAGGTTTGGAGTATTTACATGAACATGTAAGCCACCCTGTAATTCATAGGGATTTCAAGAGCAGCAATGTCCTGCTGGACAAAGATCTTCATGCTAAGGTTTCTGATTTTGGATTGGCAAAGATCGGCTCAGATAAAGCCGGTGGTCACGTCTCCACTCGAGTATTGGGGACACAAGGATATGTTGCCCCTGAGTATGCTCTAACAGGGCATTTAACAACTAAGTCAGATGTGTATAGTTATGGGGTTGTCCTCTTGGAGCTGCTCACAGGCAGAGTGCCAGTTGATATAAAGAGAGCTCCTGGGGAAGCTTCCCTTGTTTCTTGGGCTCTGCCGAGGCTGACTGATAGGGAGGGAGTGATGCATATAATGGACCCTGCATTGGAGGGTCGGTACTCCATGAAGGACGTTGTTCAAGTAGCCGCAATCGCAGCAATGTGTGTTCAACCAGAGGCGGATTACAGGCCGCTGATGGTCGACGTTGTCCAGTCACTGGTTCCCCTGGTGAGAAGTTACCGGACAACTTCAAAGATCGGTAGCAGTTCGAGTTCCAGCGCTTCCAAGTCGCCTACAGCGCACGACAAGGCTAGTTCAAGAGATTGA 1200 47.5 MEVEDDHRRKELLVLVVIVVLASLSLVSLLVAFSYYCYISHKVSKRLKIRKRVDLEDEGSFENVEKNSTEKGLQLFTFKQLYSATGGFSKSNVVGHGSFGCVYRGVLNDGRKVAIKLMDQAGKQGEEEFKVEVDLLSRLHSPYLLALLGYCSDNNHKVLVYEFMVNGGLQEHLYPVRRSNSVSVKLDWETRLRVSLEAAKGLEYLHEHVSHPVIHRDFKSSNVLLDKDLHAKVSDFGLAKIGSDKAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDIKRAPGEASLVSWALPRLTDREGVMHIMDPALEGRYSMKDVVQVAAIAAMCVQPEADYRPLMVDVVQSLVPLVRSYRTTSKIGSSSSSSASKSPTAHDKASSRD 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8656218 8659097 - Carg15733-RA Car19g00800 167767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00800 399 MobiDBLite consensus disorder prediction 375 399 - -
Car19g00800 399 Gene3D Transferase(Phosphotransferase) domain 1 164 387 - -
Car19g00800 399 MobiDBLite consensus disorder prediction 375 391 - -
Car19g00800 399 ProSiteProfiles Protein kinase domain profile. 88 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car19g00800 399 CDD STKc_IRAK 94 367 - -
Car19g00800 399 PANTHER OS07G0227300 PROTEIN 4 396 - -
Car19g00800 399 Gene3D Phosphorylase Kinase; domain 1 50 163 - -
Car19g00800 399 PANTHER OS01G0750732 PROTEIN 4 396 - -
Car19g00800 399 ProSitePatterns Protein kinases ATP-binding region signature. 94 116 IPR017441 GO:0005524
Car19g00800 399 Pfam Protein tyrosine and serine/threonine kinase 91 364 IPR001245 GO:0004672|GO:0006468
Car19g00800 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Car19g00800 399 SUPERFAMILY Protein kinase-like (PK-like) 64 364 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car19g00800 Car-Chr19:8656218 Car16g00846 Car-Chr16:6187289 3.13E-106 dispersed
Car10g00931 Car-Chr10:7245935 Car19g00800 Car-Chr19:8656218 4.98E-119 transposed
Car11g01583 Car-Chr11:12563543 Car19g00800 Car-Chr19:8656218 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89577 PF07714 PK_Tyr_Ser-Thr 4.00E-43 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00800 - - csv:101204636 683.715