Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00825 ATGACACTCGACCGCCAGTACCAACACTCGGTCCAAATACGCAGTTCCCTAGACGCCGATGATGACTCCGACCATCTCCATCCAACTCTTTCCACGCCTGCTGTCGTCAATGGAGATGACTGCGAGAATGCCGGAGATGACCTCGTCGTTCCTCCCCTGAACTTCGCCGTTGTTGACAATGGCATTTTCCGCTCCGGCTTCCCCGACTCTTCGAACTTCTCCTTCTTGCAGACCTTAGGCCTTCGTTCGATTATATGTCTTTGCCCCGAGCCATATCCTGAGGTCAGCGTGGATTTTCTCAAGTCCAATGGGATCCGATTGTTTCAATTCGGAATTGAAGGCTCTAAGGAGCCTTTTGTGAACATTCCAGACGTTACAATTCGAGAGGCACTTAAAGTTATTCTCGATGTGAGGAATCGCCCAGTTTTAATCCATTGCAAGCGAGGGAAGCACCGAACTGGTTGCGTGGTGGGATGCTTCAGAAAGTTGCAGAAATGGTGTCTATCGTCAGTCTTCGATGAGTACCAGAGGTTTGCGGCTGCGAAGGCAAGAGTTTCAGATCAGAGGTTCATCGAACTATTTGACATTTCAGGGTTTAAGTATTTGCCGTCATCATTTTGA 621 48.95 MTLDRQYQHSVQIRSSLDADDDSDHLHPTLSTPAVVNGDDCENAGDDLVVPPLNFAVVDNGIFRSGFPDSSNFSFLQTLGLRSIICLCPEPYPEVSVDFLKSNGIRLFQFGIEGSKEPFVNIPDVTIREALKVILDVRNRPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFDEYQRFAAAKARVSDQRFIELFDISGFKYLPSSF 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8790672 8793323 - Carg15707-RA Car19g00825 167792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00825 206 Pfam Tyrosine phosphatase family 49 197 IPR004861 -
Car19g00825 206 ProSitePatterns Tyrosine specific protein phosphatases active site. 144 154 IPR016130 GO:0016311|GO:0016791
Car19g00825 206 ProSiteProfiles Dual specificity protein phosphatase domain profile. 54 206 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01620 Car-Chr11:12839350 Car19g00825 Car-Chr19:8790672 4.88E-124 wgd
Car19g00825 Car-Chr19:8790672 Car02g00052 Car-Chr2:359848 4.15E-83 wgd
Car19g00825 Car-Chr19:8790672 Car20g00205 Car-Chr20:1163440 4.63E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00825 K18045 - csv:101209768 346.665