Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00864 GGCGGCGCCCCACCGCCTTGCGCTGCGTGCAAGCTTCTGCGGCGGCGGTGTGGTCAAGACTGCGTTTTTGCTCCTTATTTCCCTGCCCATCACCCCCATAAATTCTGCAGTGTTCACAAGGTGTTTGGAGCGAGTAATGTCAGCAAATTGTTGCAGGAGTTGGGAGAGCAGCAAGGGAGCGATGCTGTGAGTTCGATGGTGTACGAGGCAAATGCAAGGATTCGAGATCCAGTTTACGGGTGCGTGGGAACGATAGCGTGTCTGCAGCGCCAAGTGGATGCGTTGCAACAGCAATTGGCCATCACACGAGCCCAGCTACTTCAATTGAAAATCGCCCAATTTTCTTCACCAAAATCATCATCC 363 53.44 GGAPPPCAACKLLRRRCGQDCVFAPYFPAHHPHKFCSVHKVFGASNVSKLLQELGEQQGSDAVSSMVYEANARIRDPVYGCVGTIACLQRQVDALQQQLAITRAQLLQLKIAQFSSPKSSS 121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8993376 8993812 + Carg15667-RA Car19g00864 167831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00864 121 Coils Coil 85 112 - -
Car19g00864 121 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Car19g00864 121 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00864 - - - cmax:111468420 206.453
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01001 Car-Chr4:5755961 Car19g00864 Car-Chr19:8993376 3.69E-49 dispersed
Car13g00345 Car-Chr13:6076039 Car19g00864 Car-Chr19:8993376 4.56E-57 dispersed
Car19g00864 Car-Chr19:8993376 Car11g01357 Car-Chr11:11112461 1.60E-46 dispersed
Car11g01652 Car-Chr11:12991308 Car19g00864 Car-Chr19:8993376 1.16E-69 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car05g00698 . 1 221 AS2 family AT1G65620 63.8 1.1e-65 246.9
Car02g00432 . 2 110 AS2 family AT1G65620 83.5 1.2e-48 190.3
Car11g00069 CCT,CST,ECH 16 128 AS2 family AT1G65620 74.3 1.1e-44 177.2
Car10g00093 CCT,CST,ECH 3 142 AS2 family AT1G65620 60.0 1.4e-44 176.8
Car04g02589 CCT,ECH 1 118 AS2 family AT1G65620 68.6 5.8e-43 171.4
Car14g00607 CCT,CST,ECH 3 113 AS2 family AT1G65620 69.4 9.8e-43 170.6
Car11g01357 CCT,CST,ECH 3 166 AS2 family AT1G65620 50.6 2.2e-42 169.5
Car13g00709 CCT,CST,ECH 15 119 AS2 family AT1G65620 70.5 1.5e-38 156.8
Car18g00177 CCT,CST,ECH 14 115 AS2 family AT1G65620 71.6 5.6e-38 154.8
Car04g02784 CST 9 130 AS2 family AT1G65620 59.0 2.8e-37 152.5
Car15g00168 CCT,ECH 38 146 AS2 family AT1G65620 64.2 6.2e-37 151.4
Car02g00432 . 1 122 AS2 family AT5G66870 85.2 4.2e-56 215.7
Car05g00698 . 5 112 AS2 family AT5G66870 77.8 4.8e-44 175.6
Car10g00093 CCT,CST,ECH 1 113 AS2 family AT5G66870 69.0 7.2e-40 161.8
Car11g00069 CCT,CST,ECH 16 128 AS2 family AT5G66870 68.1 7.2e-40 161.8
Car14g00607 CCT,CST,ECH 7 113 AS2 family AT5G66870 67.3 1.4e-38 157.5
Car04g02589 CCT,ECH 1 116 AS2 family AT5G66870 63.8 5.1e-38 155.6
Car11g01357 CCT,CST,ECH 7 113 AS2 family AT5G66870 67.3 6.7e-38 155.2
Car13g00709 CCT,CST,ECH 15 138 AS2 family AT5G66870 61.3 2.0e-37 153.7
Car04g02784 CST 9 117 AS2 family AT5G66870 65.1 3.3e-37 152.9
Car15g00151 CST 9 115 AS2 family AT5G66870 65.4 9.7e-37 151.4
Car18g00177 CCT,CST,ECH 14 137 AS2 family AT5G66870 60.5 1.3e-36 151.0
Car05g00698 . 6 112 AS2 family AT2G23660 69.2 5.5e-40 162.2
Car10g00093 CCT,CST,ECH 8 113 AS2 family AT2G23660 65.1 6.0e-39 158.7
Car11g00069 CCT,CST,ECH 23 128 AS2 family AT2G23660 64.2 6.0e-39 158.7
Car14g00607 CCT,CST,ECH 7 123 AS2 family AT2G23660 57.3 9.6e-37 151.4
Car02g00516 CST 5 110 AS2 family AT2G23660 57.5 2.1e-36 150.2
Car04g02589 CCT,ECH 5 115 AS2 family AT3G27650 86.5 2.6e-54 208.8
Car14g00607 CCT,CST,ECH 4 114 AS2 family AT3G27650 82.9 2.1e-51 199.1
Car11g01357 CCT,CST,ECH 4 114 AS2 family AT3G27650 82.9 1.3e-50 196.4
Car11g00069 CCT,CST,ECH 8 129 AS2 family AT3G27650 73.0 1.3e-48 189.9
Car10g00093 CCT,CST,ECH 4 114 AS2 family AT3G27650 80.2 2.1e-48 189.1
Car13g00709 CCT,CST,ECH 10 120 AS2 family AT3G27650 70.3 1.8e-42 169.5
Car05g00698 . 3 112 AS2 family AT3G27650 68.2 3.9e-42 168.3
Car18g00177 CCT,CST,ECH 14 119 AS2 family AT3G27650 72.6 8.7e-42 167.2
Car02g00432 . 4 112 AS2 family AT3G27650 67.9 4.8e-40 161.4
Car11g00069 CCT,CST,ECH 18 187 AS2 family AT5G63090 66.9 1.0e-57 220.3
Car10g00093 CCT,CST,ECH 3 131 AS2 family AT5G63090 82.7 3.8e-57 218.4
Car04g02589 CCT,ECH 1 114 AS2 family AT5G63090 84.2 9.2e-51 197.2
Car14g00607 CCT,CST,ECH 2 125 AS2 family AT5G63090 75.8 1.2e-50 196.8
Car11g01357 CCT,CST,ECH 2 116 AS2 family AT5G63090 80.0 1.7e-49 193.0
Car13g00709 CCT,CST,ECH 6 119 AS2 family AT5G63090 78.1 1.5e-48 189.9
Car18g00177 CCT,CST,ECH 12 125 AS2 family AT5G63090 74.6 6.2e-47 184.5
Car05g00698 . 3 134 AS2 family AT5G63090 65.7 1.4e-46 183.3
Car02g00432 . 2 110 AS2 family AT5G63090 70.6 1.5e-40 163.3
Car13g00345 . 16 143 AS2 family AT5G63090 60.2 8.1e-39 157.5
Car02g00017 . 12 115 AS2 family AT5G63090 68.3 1.8e-38 156.4
Car02g00516 CST 5 119 AS2 family AT5G63090 63.5 3.1e-38 155.6
Car11g01652 . 16 141 AS2 family AT5G63090 57.9 4.0e-38 155.2
Car04g01025 . 4 106 AS2 family AT5G63090 69.9 1.5e-37 153.3
Car04g00127 . 4 140 AS2 family AT5G63090 55.4 4.4e-37 151.8
Car04g01025 . 3 114 AS2 family AT2G30130 92.0 3.2e-54 208.8
Car04g00127 . 3 135 AS2 family AT2G30130 78.9 2.1e-53 206.1
Car02g00516 CST 2 138 AS2 family AT2G30130 71.5 4.3e-51 198.4
Car20g00287 CST 532 663 AS2 family AT2G30130 70.1 1.6e-45 179.9
Car13g00345 . 11 131 AS2 family AT2G30130 68.6 2.7e-45 179.1
Car02g00017 . 12 118 AS2 family AT2G30130 75.7 5.1e-44 174.9
Car11g01652 . 16 122 AS2 family AT2G30130 70.1 1.5e-40 163.3
Car15g00405 . 15 123 AS2 family AT2G30130 67.9 1.9e-38 156.4
Car10g00093 CCT,CST,ECH 8 111 AS2 family AT2G30130 68.3 1.2e-37 153.7
Car11g00069 CCT,CST,ECH 23 163 AS2 family AT2G30130 55.3 1.2e-37 153.7
Car19g00864 . 1 107 AS2 family AT2G30130 67.3 1.2e-37 153.7
Car04g01001 . 48 150 AS2 family AT2G30130 69.9 1.6e-37 153.3
Car01g00485 . 34 139 AS2 family AT2G30130 63.2 1.3e-36 150.2
Car05g00698 . 7 109 AS2 family AT2G30130 67.0 1.3e-36 150.2
Car13g00345 . 13 173 AS2 family AT1G31320 74.1 7.2e-66 247.3
Car02g00017 . 1 164 AS2 family AT1G31320 72.5 8.2e-62 233.8
Car11g01652 . 5 124 AS2 family AT1G31320 70.0 4.8e-46 181.4
Car04g01025 . 2 122 AS2 family AT1G31320 68.3 3.5e-44 175.3
Car04g00127 . 2 113 AS2 family AT1G31320 70.5 3.8e-43 171.8
Car19g00864 . 2 113 AS2 family AT1G31320 68.8 3.6e-41 165.2
Car02g00516 CST 6 122 AS2 family AT1G31320 65.8 1.0e-40 163.7
Car04g01001 . 48 160 AS2 family AT1G31320 63.7 6.3e-38 154.5
Car15g00405 . 15 124 AS2 family AT1G31320 65.5 4.1e-37 151.8
Car10g00093 CCT,CST,ECH 9 120 AS2 family AT1G31320 62.5 9.1e-37 150.6
Car11g00069 CCT,CST,ECH 24 126 AS2 family AT1G31320 67.0 1.2e-36 150.2
Car01g00485 . 31 149 AS2 family AT2G28500 76.5 1.1e-48 190.7
Car02g00632 . 30 195 AS2 family AT2G28500 55.2 2.5e-45 179.5
Car15g00405 . 13 130 AS2 family AT2G28500 71.2 2.1e-44 176.4
Car04g00252 . 48 140 AS2 family AT2G28500 87.1 2.2e-41 166.4
Car20g00407 . 34 127 AS2 family AT2G28500 85.1 2.8e-41 166.0
Car04g01337 . 54 145 AS2 family AT2G28500 84.8 6.3e-41 164.9
Car02g00516 CST 6 116 AS2 family AT2G28500 66.7 5.9e-39 158.3
Car13g00164 . 52 143 AS2 family AT2G28500 78.3 7.7e-39 157.9
Car04g00127 . 5 117 AS2 family AT2G28500 64.6 7.2e-37 151.4
Car04g01025 . 5 113 AS2 family AT2G28500 66.1 9.4e-37 151.0
Car02g00632 . 4 195 AS2 family AT1G07900 56.9 5.9e-45 177.9
Car01g00485 . 31 149 AS2 family AT1G07900 71.4 1.7e-44 176.4
Car04g00252 . 48 203 AS2 family AT1G07900 68.9 6.5e-44 174.5
Car04g01337 . 54 208 AS2 family AT1G07900 66.9 5.5e-43 171.4
Car20g00407 . 34 198 AS2 family AT1G07900 64.5 9.4e-43 170.6
Car13g00164 . 18 216 AS2 family AT1G07900 56.2 3.6e-42 168.7
Car15g00405 . 13 176 AS2 family AT1G07900 54.2 8.0e-42 167.5
Car02g00017 . 1 164 AS2 family AT1G16530 56.0 1.3e-45 179.9
Car11g01652 . 16 143 AS2 family AT1G16530 62.8 5.3e-42 167.9
Car13g00345 . 12 121 AS2 family AT1G16530 69.4 1.0e-40 163.7
Car02g00516 CST 2 159 AS2 family AT1G16530 52.8 3.2e-39 158.7
Car19g00864 . 1 110 AS2 family AT1G16530 65.8 2.3e-37 152.5
Car04g01025 . 5 110 AS2 family AT1G16530 68.2 3.0e-37 152.1
Car04g01001 . 1 157 AS2 family AT2G30340 67.7 4.7e-56 215.3
Car15g00168 CCT,ECH 22 150 AS2 family AT2G30340 76.3 9.8e-54 207.6
Car04g00107 CCT,ECH 31 153 AS2 family AT2G30340 72.4 1.9e-49 193.4
Car02g00017 . 9 126 AS2 family AT2G30340 60.2 4.9e-37 152.1
Car15g00168 CCT,ECH 27 179 AS2 family AT2G40470 75.8 3.4e-59 225.3
Car04g01001 . 32 157 AS2 family AT2G40470 84.9 7.0e-57 217.6
Car04g00107 CCT,ECH 31 163 AS2 family AT2G40470 76.7 5.6e-54 208.0
Car02g00017 . 9 129 AS2 family AT2G40470 62.0 1.6e-40 163.3
Car04g00127 . 5 141 AS2 family AT2G40470 56.7 9.5e-38 154.1
Car13g00345 . 17 127 AS2 family AT2G40470 63.1 9.5e-38 154.1
Car02g00516 CST 6 122 AS2 family AT2G40470 59.8 1.6e-37 153.3
Car11g01652 . 16 124 AS2 family AT2G40470 61.5 2.8e-37 152.5
Car19g00864 . 6 110 AS2 family AT2G40470 65.7 8.1e-37 151.0
Car04g02784 CST 1 124 AS2 family AT3G11090 75.8 3.8e-48 188.3
Car15g00151 CST 1 175 AS2 family AT3G11090 61.1 4.9e-48 188.0
Car02g01504 . 1 113 AS2 family AT2G42440 77.9 3.1e-46 182.6
Car19g00061 . 1 115 AS2 family AT2G42440 72.2 3.2e-43 172.6
Car08g00248 . 5 125 AS2 family AT2G42440 63.4 7.3e-40 161.4
Car08g00835 CST 35 146 AS2 family AT2G42440 63.8 6.8e-38 154.8
Car17g00028 CST 24 139 AS2 family AT2G42440 62.2 2.6e-37 152.9
Car02g01505 . 22 142 AS2 family AT2G42440 62.0 9.9e-37 151.0
Car19g00060 . 30 137 AS2 family AT2G42440 67.6 9.9e-37 151.0
Car02g01504 . 4 117 AS2 family AT3G58190 79.8 1.3e-48 190.3
Car19g00061 . 4 113 AS2 family AT3G58190 78.2 1.4e-45 180.3
Car08g00248 . 4 125 AS2 family AT3G58190 71.0 8.8e-45 177.6
Car08g00835 CST 35 137 AS2 family AT3G58190 75.7 7.7e-41 164.5
Car19g00060 . 30 137 AS2 family AT3G58190 70.4 5.0e-40 161.8
Car17g00028 CST 24 135 AS2 family AT3G58190 67.9 8.5e-40 161.0
Car02g01505 . 22 127 AS2 family AT3G58190 68.9 3.2e-39 159.1
Car14g01786 . 118 232 AS2 family AT3G58190 63.5 3.0e-37 152.5
Car02g01504 . 1 142 AS2 family AT2G31310 60.4 3.3e-40 162.2
Car19g00060 . 30 225 AS2 family AT2G42430 53.4 1.3e-52 203.8
Car08g00835 CST 35 137 AS2 family AT2G42430 77.7 1.7e-41 166.8
Car17g00028 CST 24 126 AS2 family AT2G42430 72.8 9.6e-40 161.0
Car02g01504 . 3 109 AS2 family AT2G42430 72.0 2.8e-39 159.5
Car19g00061 . 3 94 AS2 family AT2G42430 79.3 1.1e-38 157.5
Car14g01786 . 117 228 AS2 family AT2G42430 65.2 1.4e-38 157.1
Car06g00752 . 39 155 AS2 family AT2G42430 63.2 1.3e-36 150.6
Car17g00028 CST 24 212 AS2 family AT4G00220 61.9 8.6e-59 224.2
Car08g00835 CST 35 252 AS2 family AT4G00220 56.3 2.8e-57 219.2
Car14g01786 . 109 284 AS2 family AT4G00220 53.1 8.6e-43 171.0
Car17g00029 . 11 194 AS2 family AT4G00220 54.3 8.9e-40 161.0
Car17g00028 CST 24 227 AS2 family AT2G45420 64.3 2.5e-70 262.7
Car08g00835 CST 35 249 AS2 family AT2G45420 67.3 3.3e-70 262.3
Car14g01786 . 121 277 AS2 family AT2G45420 60.0 4.6e-48 188.7
Car19g00060 . 31 133 AS2 family AT2G45420 77.7 2.4e-41 166.4
Car02g01505 . 23 129 AS2 family AT2G45420 72.0 7.1e-41 164.9
Car08g00248 . 10 116 AS2 family AT2G45420 69.2 5.1e-39 158.7
Car06g00752 . 40 146 AS2 family AT2G45420 71.0 2.5e-38 156.4
Car02g01504 . 7 97 AS2 family AT2G45420 76.9 2.1e-37 153.3
Car19g00061 . 7 95 AS2 family AT2G45420 77.5 1.1e-36 151.0
Car06g00752 . 10 153 AS2 family AT3G03760 70.9 2.1e-48 189.9
Car08g00835 CST 35 136 AS2 family AT3G03760 82.4 1.5e-41 167.2
Car17g00028 CST 24 125 AS2 family AT3G03760 78.4 1.1e-39 161.0
Car19g00060 . 30 144 AS2 family AT3G03760 69.6 1.1e-39 161.0
Car08g00835 CST 35 146 AS2 family AT4G00210 72.3 1.7e-43 173.3
Car17g00028 CST 24 138 AS2 family AT4G00210 70.4 2.2e-43 172.9
Car14g01786 . 117 223 AS2 family AT4G00210 68.2 2.3e-40 162.9
Car19g00060 . 31 133 AS2 family AT4G00210 68.9 8.9e-37 151.0
Car08g00248 . 10 114 AS2 family AT4G00210 65.7 1.2e-36 150.6
Car17g00028 CST 24 214 AS2 family AT2G45410 50.5 9.1e-46 180.6
Car08g00835 CST 35 140 AS2 family AT2G45410 72.6 2.9e-44 175.6
Car14g01786 . 117 223 AS2 family AT2G45410 67.3 1.2e-40 163.7
Car19g00060 . 31 133 AS2 family AT2G45410 68.0 5.9e-37 151.4
Car04g00183 . 20 159 AS2 family AT5G06080 60.0 1.4e-43 173.3
Car04g01076 . 21 123 AS2 family AT5G06080 72.8 1.5e-39 159.8
Car17g00676 . 22 145 AS2 family AT3G13850 66.9 4.6e-43 172.2
Car08g00654 . 38 146 AS2 family AT3G13850 72.5 2.5e-41 166.4
Car14g00743 . 1 162 AS2 family AT1G68510 65.9 1.8e-59 226.5
Car01g00353 . 1 162 AS2 family AT1G68510 63.5 1.7e-57 219.9
Car10g00222 CST 1 140 AS2 family AT1G68510 68.3 1.5e-53 206.8
Car03g00839 CST 1 104 AS2 family AT1G68510 63.5 1.2e-39 160.6
Car07g00582 CST 1 104 AS2 family AT1G68510 62.5 7.7e-39 157.9
Car10g00222 CST 1 134 AS2 family AT1G67100 75.0 1.0e-59 227.3
Car03g00839 CST 1 110 AS2 family AT1G67100 66.4 2.7e-44 176.0
Car07g00582 CST 1 110 AS2 family AT1G67100 66.4 3.6e-44 175.6
Car01g01399 CCT,ECH 1 104 AS2 family AT1G67100 65.4 8.5e-38 154.5
Car09g00237 CCT,ECH 1 110 AS2 family AT1G67100 61.8 1.1e-37 154.1
Car01g00353 . 1 304 AS2 family AT3G02550 57.5 2.7e-80 295.8
Car14g00743 . 1 283 AS2 family AT3G02550 58.1 2.3e-79 292.7
Car10g00222 CST 1 152 AS2 family AT3G02550 70.4 8.1e-61 231.1
Car03g00839 CST 1 129 AS2 family AT3G02550 56.8 6.0e-40 161.8
Car07g00582 CST 1 104 AS2 family AT3G02550 68.3 1.8e-39 160.2
Car07g00582 CST 1 203 AS2 family AT5G67420 64.2 5.7e-72 268.1
Car03g00839 CST 1 232 AS2 family AT5G67420 59.8 3.7e-71 265.4
Car14g00743 . 3 112 AS2 family AT5G67420 67.3 5.0e-44 175.3
Car09g00237 CCT,ECH 1 117 AS2 family AT5G67420 66.7 1.1e-43 174.1
Car01g01399 CCT,ECH 1 153 AS2 family AT5G67420 57.7 1.5e-43 173.7
Car01g00353 . 3 112 AS2 family AT5G67420 66.4 4.2e-43 172.2
Car10g00222 CST 3 112 AS2 family AT5G67420 62.7 1.2e-40 164.1
Car07g00582 CST 1 233 AS2 family AT3G49940 60.0 7.3e-72 267.7
Car03g00839 CST 1 231 AS2 family AT3G49940 61.0 4.0e-70 261.9
Car01g00353 . 3 157 AS2 family AT3G49940 54.8 5.9e-45 178.3
Car09g00237 CCT,ECH 1 127 AS2 family AT3G49940 65.6 1.0e-44 177.6
Car14g00743 . 3 157 AS2 family AT3G49940 52.2 8.5e-44 174.5
Car10g00222 CST 3 112 AS2 family AT3G49940 61.8 4.3e-40 162.2
Car03g00839 CST 1 232 AS2 family AT4G37540 57.2 5.3e-67 251.5
Car07g00582 CST 1 234 AS2 family AT4G37540 56.0 1.0e-65 247.3
Car09g00237 CCT,ECH 1 134 AS2 family AT4G37540 64.2 1.7e-44 176.8
Car01g00353 . 3 167 AS2 family AT4G37540 54.5 1.8e-43 173.3
Car14g00743 . 3 165 AS2 family AT4G37540 52.1 1.0e-41 167.5
Car10g00222 CST 3 113 AS2 family AT4G37540 62.2 1.6e-39 160.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000955 1 3 2 2 2 3 4 3 3 3 3 3 3 4 3 3 3 2 3 3 3 2 3 3 3 3 3 3 3 2 84
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5312 PF03195 LOB 3.80E-40 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00864 Car_Chr19 FPKM 5.754073 6.715262 8.415475 8.294892 10.959837 10.173802 12.020292 10.117366 10.146904 10.525292