Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00864 GGCGGCGCCCCACCGCCTTGCGCTGCGTGCAAGCTTCTGCGGCGGCGGTGTGGTCAAGACTGCGTTTTTGCTCCTTATTTCCCTGCCCATCACCCCCATAAATTCTGCAGTGTTCACAAGGTGTTTGGAGCGAGTAATGTCAGCAAATTGTTGCAGGAGTTGGGAGAGCAGCAAGGGAGCGATGCTGTGAGTTCGATGGTGTACGAGGCAAATGCAAGGATTCGAGATCCAGTTTACGGGTGCGTGGGAACGATAGCGTGTCTGCAGCGCCAAGTGGATGCGTTGCAACAGCAATTGGCCATCACACGAGCCCAGCTACTTCAATTGAAAATCGCCCAATTTTCTTCACCAAAATCATCATCC 363 53.44 GGAPPPCAACKLLRRRCGQDCVFAPYFPAHHPHKFCSVHKVFGASNVSKLLQELGEQQGSDAVSSMVYEANARIRDPVYGCVGTIACLQRQVDALQQQLAITRAQLLQLKIAQFSSPKSSS 121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8993376 8993812 + Carg15667-RA Car19g00864 167831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00864 121 Coils Coil 85 112 - -
Car19g00864 121 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Car19g00864 121 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01001 Car-Chr4:5755961 Car19g00864 Car-Chr19:8993376 3.69E-49 dispersed
Car13g00345 Car-Chr13:6076039 Car19g00864 Car-Chr19:8993376 4.56E-57 dispersed
Car19g00864 Car-Chr19:8993376 Car11g01357 Car-Chr11:11112461 1.60E-46 dispersed
Car11g01652 Car-Chr11:12991308 Car19g00864 Car-Chr19:8993376 1.16E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5312 PF03195 LOB 3.80E-40 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00864 - - cmax:111468420 206.453