Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00887 ATGTTCCATCCTAATAAGAAAGCTTCGAGTATGAATTCCCACGAGAGATCAGGGATGTGCGTTCAAGGCGACTCCGGCCTCGTCCTCACCACCGACCCCAAGCCCCGCCTCCGCTGGACTGTCGAGCTTCACGAGCGCTTTGTGGATGCTGTCACCCAGCTCGGCGGCCCTGATAAGGCCACCCCCAAGACCATCATGCGAGTTATGGGTGTCAAGGGTCTTACTCTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGACTGGGAAAGCAGCCTCACAAGGAATTCAATGATCATTCAATCAAGGATGGTATGAGAGCTTCCGGAATAGAATTTCATCGAAACACTGCTTCTTCGTCCAACGTCATCAACCGCACCATGAATGATGGTAACTCACACATGGTTGATGCGATTAGGATGCAAATGGAGGTCCAGAGAAGATTGCATGAACAACTTGAGGTGCAAAGACACCTGCAGTTGCGGATCGAGGCACAAGGGAAGTATATGCAGAATATATTAGAAAAGGCTTGTCAAACCCTTGCGGGTGAGAACATGGCAGTTTCCGGCGGCTACAAGGCCATGGGGGGCATCCCTCATAATAATAATAATCAGCAAGGCGGAGGCGGCGGTGGCATTGGCGACATGGCTGGAGGGATCAAAGATTTTGGCTCCCCTCTCGGCTTCCCTTCTTTCCAAGACCTGAACCTCTATGGAGGCGACCAGCTTGATCTTGATGGATTCATGCCTCACAACGACAGCTTACTGTGCTTGGGAAAGAAGAAGCCGAGACCACCAACACCGACAATGAACTACGGCGGCAGCTCCGGAAAAGGTGCGTTGGACTGGCCGGATGATCTCCGGCTGCAAGATATAGGGATGGCGCCGCCGTCGTCGTGTGTGGTGGAGCAAGAAGATGATTTCAAAGGCATGGATGGGACGCTAGTGGAAAGAGATCAATTGGAGGAAATGTATGATGCAAAGTCAGTGGTGGCAGATGAAGGCATAGGGGGGGATCACAAGAACAATAATAATAACAATAACCATAATAATAATGCGTCCCTAAAGCTTCAGAGGCCATCCCCCCGAAGGGCAGCCCTGGCCGTGGGTAGAGCCAACCACCCTCTTACCACCGCTCCTCTCACCACAAATTCACCCTTCGGTTAA 1164 51.37 MFHPNKKASSMNSHERSGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGIEFHRNTASSSNVINRTMNDGNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQNILEKACQTLAGENMAVSGGYKAMGGIPHNNNNQQGGGGGGIGDMAGGIKDFGSPLGFPSFQDLNLYGGDQLDLDGFMPHNDSLLCLGKKKPRPPTPTMNYGGSSGKGALDWPDDLRLQDIGMAPPSSCVVEQEDDFKGMDGTLVERDQLEEMYDAKSVVADEGIGGDHKNNNNNNNHNNNASLKLQRPSPRRAALAVGRANHPLTTAPLTTNSPFG 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9140555 9142728 + Carg15644-RA Car19g00887 167854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00887 387 MobiDBLite consensus disorder prediction 1 19 - -
Car19g00887 387 MobiDBLite consensus disorder prediction 338 357 - -
Car19g00887 387 MobiDBLite consensus disorder prediction 258 278 - -
Car19g00887 387 MobiDBLite consensus disorder prediction 333 365 - -
Car19g00887 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 91 IPR017930 -
Car19g00887 387 Pfam Myb-like DNA-binding domain 37 85 IPR001005 -
Car19g00887 387 MobiDBLite consensus disorder prediction 1 27 - -
Car19g00887 387 Pfam MYB-CC type transfactor, LHEQLE motif 134 179 IPR025756 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01696 Car-Chr14:13483448 Car19g00887 Car-Chr19:9140555 8.24E-72 dispersed
Car19g00157 Car-Chr19:1434362 Car19g00887 Car-Chr19:9140555 1.38E-49 dispersed
Car10g01051 Car-Chr10:10841263 Car19g00887 Car-Chr19:9140555 0 transposed
Car14g01006 Car-Chr14:8203681 Car19g00887 Car-Chr19:9140555 1.43E-56 transposed
Car19g00887 Car-Chr19:9140555 Car20g00251 Car-Chr20:1458214 2.76E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5314 PF00249 Myb_DNA-binding 2.20E-06 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00887 - - cpep:111811117 735.332