Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00003 ATGGACGAGTCAATTGCAACAAGATATTGGTGTCACATGTGTTCTCAAATGGTGAATCCCATCGTTGACGTGGAAATTAAATGCCCTTTCTGCCGTAGTGGCTTTGTTGAAGAGATGGGTAACGGTATGTCCAGCGACAATAATGGTAATAATAATAATAATAGTAATAATGCGCTTGAATCCGATTTTGGATCGGAGCGAGCTTTGTCCCTCTGGGCCCCGATACTGCTGGGTATGATGGGAAATCCCCGTGGGCGTCGTAGATTCAGGCATCTAGAGTTTGACGAAGATGATGATGATAATAATGATCAGGAGCATGGGGATGGGGAGGGGAACCGTGTGAGTAGTGAGCCGACTGAGCTTGATTCGGTCATTAGGAGGAGGAGGAGAAGTTCGGCTACCATTCTACAGTTGCTCCAAGGTATCAGAGCTGGAATGGCAACTGGTGAATCAGAGAATAGTTACGAGGGAGAGAGGAGCAGAGAAAGAGAAAGAGAACGAGAACGAGAAAGAGAGCGGGTTATCCTTATAAATCCTTTCAACCAGACCATTGTAGTTCAAGGAGGTGAGAGTCAAAATCATAACGCTATAGGGTCGCTGGGTGATTATTTCGTAGGACCTGGTTTGGATTTGTTATTGCAACATCTAGCCGAGAATGATCCCAACAGATATGGTACTCCACCAGCCCAGAAGGAGGCAGTTGATGCGCTGCCCACGGTGAGAGTTGAATGCGGGGATAATCGTCTGCAATGTTCGGTGTGTTTGGATGAGTTTGAGATGGATGAAGAAGCCAAGGAGATGCCTTGTAAGCATAAGTTTCATTCAGGGTGTATTCTGCCGTGGCTGGAGCTGCATAGTTCCTGCCCAGTTTGTAGGCATCAATTGCCTGCGGATGAGTCCAAGCGTGATGCGGATGGTGGGTCGGCTAGGTTTATGGGTAGTGGCAGTGGCAGTGGCAGTGGGGAGATTGATGGGAGAAACGCATCTGGGACTGGGAGAAGGTTTTCGTTTCCATGGCCATTCAATGGCTTGTTTTCTTCGCAAGGAAACTCCTCGGGAGGAAGTGAAAGTGAGTCTCAAAGGGATCACACATCCATTTGA 1101 47.77 MDESIATRYWCHMCSQMVNPIVDVEIKCPFCRSGFVEEMGNGMSSDNNGNNNNNSNNALESDFGSERALSLWAPILLGMMGNPRGRRRFRHLEFDEDDDDNNDQEHGDGEGNRVSSEPTELDSVIRRRRRSSATILQLLQGIRAGMATGESENSYEGERSRERERERERERERVILINPFNQTIVVQGGESQNHNAIGSLGDYFVGPGLDLLLQHLAENDPNRYGTPPAQKEAVDALPTVRVECGDNRLQCSVCLDEFEMDEEAKEMPCKHKFHSGCILPWLELHSSCPVCRHQLPADESKRDADGGSARFMGSGSGSGSGEIDGRNASGTGRRFSFPWPFNGLFSSQGNSSGGSESESQRDHTSI 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 17580 18680 + Carg28117-RA Car20g00003 167862

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00003 366 MobiDBLite consensus disorder prediction 298 366 - -
Car20g00003 366 Pfam zinc-ribbon 7 39 IPR039525 GO:0061630
Car20g00003 366 MobiDBLite consensus disorder prediction 93 127 - -
Car20g00003 366 MobiDBLite consensus disorder prediction 154 169 - -
Car20g00003 366 MobiDBLite consensus disorder prediction 106 127 - -
Car20g00003 366 MobiDBLite consensus disorder prediction 341 366 - -
Car20g00003 366 ProSiteProfiles Zinc finger RING-type profile. 251 292 IPR001841 -
Car20g00003 366 MobiDBLite consensus disorder prediction 147 169 - -
Car20g00003 366 Pfam Ring finger domain 250 292 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00003 K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] - csv:101216515 501.516
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00960 Car20g00003 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g01133 Car-Chr12:11020414 Car20g00003 Car-Chr20:17580 2.62E-11 dispersed
Car18g00086 Car-Chr18:456093 Car20g00003 Car-Chr20:17580 9.26E-46 dispersed
Car20g00003 Car-Chr20:17580 Car04g01159 Car-Chr4:6661348 6.71E-33 dispersed
Car02g00960 Car-Chr2:6762800 Car20g00003 Car-Chr20:17580 3.73E-154 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g12 . . . . Bpe01g00362 . . . . . . . . . . Cpe05g00568 . . . . . . . . Cla02g02368 Cam02g2519 Cec02g2566 Cco02g2595 Clacu02g2493 Cmu02g2424 Cre02g2742 . . . . . . Chy05g00006 Cme05g00008 Blo08g00158 Blo14g00331 . . . . Bma07g00317 Bma11g00345 . Cmo02g01194 Cmo20g00005 Cma02g01160 Cma20g00005 Car02g00960 Car20g00003 Cpe16g00943 . Bhi10g00490 Tan07g0562 . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006217 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 0 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00003 Car_Chr20 FPKM 4.227227 4.373385 6.814358 5.804498 4.679867 4.221363 5.462117 4.35066 4.160005 4.037729