Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00013 ATGGCAGTAACAGCCCCAGGGCAGCTCAACGTTAACGAGCCCCCTTCGTGGGGATCTAGAAGTGTCGATTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCGCTGAAAAAAATACGGATGGATAATGAGAGGGAGGGGTTCCCTATTACTGCCATTCGAGAAATCAAAATTCTGAAGAAACTCCATCATGAAAATGTAATCAAGTTGAAAGAAATTGTGACATCTCCAGGTCCTGAGAAGGATGAACAAGGGAAGCCAGGCATCTTATCTGGATCTGCAGATGGTAACAAGTACAAAGGTGGTATCTACATGGTTTTCGAGTACATGGATCATGATTTGACAGGTCTTGCTGATCGTCCGGGGATGAGATTTTCAGTTCCCCAAATCAAGTGTTACATGAGGCAGCTACTCACCGGGCTTCACTATTGTCATGTAAATCAAGTACTGCATAGAGATATAAAAGGCTCAAATCTGCTTATTGACAATGAAGGAAATTTGAAGCTTGCAGATTTTGGGCTTGCCCGATCATTTTCTAACGATCACAATGCAAATCTAACAAATCGTGTCATTACCTTATGGTACAGTAACCTTCAACCAGAGCAATTAAATAAGATCTTTGAGCTATGTGGTGCTCCAGATGAAGTCAATTGGCCCGGGGTTTCTAAAATCCCTTGGTACAACAATTTTAAGCCCACAAGACCAATGAAGAGACGTATTAGAGAAGTTTTCAGGCACTTTGATCGTCATGCTTTAGAACTGTTAGAGAAGATGATTACTCTCGATCCTTCTCAGAGGATATCTGCCAAGGATGCCCTGGATGCGGAGTACTTTTGGACGGACCCATTACCCTGTGACCCCAAGAGTTTGCCAAAGTATGAATCATCACACGAGTTCCAGACAAAGAAGAAGCGGCAACAGCAACGACAACATGAAGAAAATGCAAAGCGACAGAAGTTGCAACACCCACAGCATGCACGCCTTCCACCTATTCAGCAGTCTGGGCAAGCACATGCACACATGCGACCGGTACCCAACCAACCAATTCATGGGTCTCAACCACCAGTTGCTGCAGGACCTAGCCATCATTTTGGAAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCTGGTGGAAATCCCCCTTCTGGATACAACCATTCAAGTCGTGGTGGTCAAGGTGGTTATGGTAACAATCAATATGCTCAAGGACGAGGCGCTGCACCCTATGGGTCCGGTAACATGTCAGGTGCTGGTCCTCGAGGTGGAGCTGGAGGTGGCAGTAGTTATGGCATGGGAGCTCCAAATTACCCACAGAATGGTCCATATCCTGGTAGTTCTGGCACTGGCCGGGGCTCCAATGTGATGGGTGGAAACCGGAACCAACAATACGGGTGGCAACAGTAA 1458 46.23 MAVTAPGQLNVNEPPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKPGILSGSADGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYSNLQPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRIREVFRHFDRHALELLEKMITLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEENAKRQKLQHPQHARLPPIQQSGQAHAHMRPVPNQPIHGSQPPVAAGPSHHFGKPRGPPGPGRYPGGNPPSGYNHSSRGGQGGYGNNQYAQGRGAAPYGSGNMSGAGPRGGAGGGSSYGMGAPNYPQNGPYPGSSGTGRGSNVMGGNRNQQYGWQQ 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 77129 82969 + Carg06958-RA Car20g00013 167872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00013 485 MobiDBLite consensus disorder prediction 306 485 - -
Car20g00013 485 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Car20g00013 485 MobiDBLite consensus disorder prediction 457 485 - -
Car20g00013 485 MobiDBLite consensus disorder prediction 399 417 - -
Car20g00013 485 MobiDBLite consensus disorder prediction 308 337 - -
Car20g00013 485 ProSiteProfiles Protein kinase domain profile. 25 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car20g00013 485 Pfam Protein kinase domain 25 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car20g00013 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02441 Car-Chr4:19443442 Car20g00013 Car-Chr20:77129 0 dispersed
Car20g00013 Car-Chr20:77129 Car04g00518 Car-Chr4:2917917 1.18E-88 dispersed
Car20g00013 Car-Chr20:77129 Car01g00780 Car-Chr1:4830404 7.36E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89581 PF00069 Pkinase 1.40E-47 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00013 K08819 - csv:101220936 858.596