Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00058 ATGGGATCCATGAACTCCAACAATTGGCTTTCCTTTCCACTTTCACCCACTAATCCCTCTTTGCCTCCACATCTTCAAACACCAACTCATGCCCATCACTTCTCTTTGGGGAATTTGGAGAATGACAATATGGATATCCCATTTCAAACCCACGAGTGGAATCTGATAAGTGGTCAAGGTGGAGGTGAAGTTCCGAAAGTAGCAGACTTTTTAGGCGTAAGCAAGGCAGAAAATGAGGCAGATCTCATTGGGTTTAATCAAATTCATGAAGCGAATGATACGGATTACTTGTTTCCAATCACAAGATTGGTTCCTCTTCAACAACACCCAACACCCGCGGCTGCTCCTATCAATATGGACTCTACTACTAACTATGACCCTCAAGATAACTCCAACAGCTTGCAGTCTTTGACACTTTCAATGGGCAGTGGGAAGCCCTCTACTTGTGAAACCAGCTCCACCCCTGACAATGCAAACAATAATACCACTCTCGATGTCACTCCTAGAAGAACTTTGGACACTTTTGGGCAAAGGACTTCAATTTATCGCGGAGTGACCAGGCATAGATGGACGGGAAGGTATGAAGCACATTTATGGGATAATAGTTGCAGGAGGGAAGGGCAGTCGAGGAAGGGTCGCCAAGGTGGGTATGACAAAGAAGATAAAGCAGCTAGGGCTTATGATCTTGCTGCATTGAAGTATTGGGGAACATCCACCACCACCAACTTTCCCATTAGTAACTACGAGAAGGAAGTTGAGGAAATGAAGCACATGACAAGACAAGAATTTGTGGCTTCCATTAGAAGGAAGAGTAGTGGGTTTTCAAGGGGCGCGTCAATGTATCGTGGAGTTACAAGGCACCACCAGCATGGGAGATGGCAGGCTAGGATTGGCAGAGTGGCAGGAAACAAAGATCTTTATTTGGGAACCTTCAGCACGGAAGAGGAGGCAGCAGAGGCATACGACATAGCGGCCATAAAATTCAGAGGGCTTAATGCAGTCACCAACTTTGACATGAGCCGTTACGACGTGAAAAGCATACTAGAGAGCAACACGCTCCCAATAGGCGGCGGTGCTGCCAAACGTCTGAAAGAGGCACAAGCCATCGAGTCGTCTCGAAAGCGGGACGAAATGATTGCGCTTGGTTCCTCCTCTTCTTTCCAATATGGAAGCTCATCATCGTCTACTAATTCCTCCAATCACAGGCTACAACAACAACAACAACAACCCTCTTACCCTCTACTCCAACAGCCTAATTTGAATATGGACCACCATCACCACCACCACCACCACCTTCAAACCCAGCCTTTCCTCTCTCTTCAAAACCACCACGACATTTCTCAATACACCAACGATCCCTCCTCCTTTCACCACTCTTCTACTTACATGCACACCCAACTCCAGCTTCACCACCACCAATCTGATAATGCCCCTTATCCTAACAACAACAACAACAACAACCATCAATTCTACGGCGGCGCTGGTGGTGGCTATCTTCATAACCATCCGGGTTTGCTCCATGGGATGATCAACATGGGCGGCGGCGGCGGCGGTGGAGGGTCTAATTTGGAGAGTAGTAACAACAACAATAATGCGTTGTCCAGTGCGAATCATTTTGAGAATCCTAATAATAATAGTAATGGAGGGTATCTTGGGAATGCATTTGGGATGGGTTCTACATCGGCCACCGCGAACAACGGCGCCCCAGCTGAAGAATACGCACTGGTTAAGGTTGACTATGATATGCCGCCTAATGCTGGTGGGTATGGTAGCTGGTCGGGGGATTCGGTGCAGGGTTCTAACCCTGGGGTTTTCTCCATGTGGAACGATTGA 1833 47.52 MGSMNSNNWLSFPLSPTNPSLPPHLQTPTHAHHFSLGNLENDNMDIPFQTHEWNLISGQGGGEVPKVADFLGVSKAENEADLIGFNQIHEANDTDYLFPITRLVPLQQHPTPAAAPINMDSTTNYDPQDNSNSLQSLTLSMGSGKPSTCETSSTPDNANNNTTLDVTPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNTLPIGGGAAKRLKEAQAIESSRKRDEMIALGSSSSFQYGSSSSSTNSSNHRLQQQQQQPSYPLLQQPNLNMDHHHHHHHHLQTQPFLSLQNHHDISQYTNDPSSFHHSSTYMHTQLQLHHHQSDNAPYPNNNNNNNHQFYGGAGGGYLHNHPGLLHGMINMGGGGGGGGSNLESSNNNNNALSSANHFENPNNNSNGGYLGNAFGMGSTSATANNGAPAEEYALVKVDYDMPPNAGGYGSWSGDSVQGSNPGVFSMWND 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 321250 323835 - Carg06913-RA Car20g00058 167917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00058 610 MobiDBLite consensus disorder prediction 466 488 - -
Car20g00058 610 Pfam AP2 domain 281 330 IPR001471 GO:0003700|GO:0006355
Car20g00058 610 Pfam AP2 domain 181 236 IPR001471 GO:0003700|GO:0006355
Car20g00058 610 ProSiteProfiles AP2/ERF domain profile. 181 244 IPR001471 GO:0003700|GO:0006355
Car20g00058 610 MobiDBLite consensus disorder prediction 385 436 - -
Car20g00058 610 MobiDBLite consensus disorder prediction 520 545 - -
Car20g00058 610 MobiDBLite consensus disorder prediction 139 166 - -
Car20g00058 610 MobiDBLite consensus disorder prediction 385 418 - -
Car20g00058 610 ProSiteProfiles AP2/ERF domain profile. 280 338 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01376 Car-Chr1:12078855 Car20g00058 Car-Chr20:321250 1.08E-79 dispersed
Car05g00741 Car-Chr5:5415780 Car20g00058 Car-Chr20:321250 1.97E-98 dispersed
Car11g00359 Car-Chr11:1969480 Car20g00058 Car-Chr20:321250 3.63E-125 dispersed
Car11g00872 Car-Chr11:5425205 Car20g00058 Car-Chr20:321250 8.15E-08 dispersed
Car12g00953 Car-Chr12:9641161 Car20g00058 Car-Chr20:321250 1.66E-129 dispersed
Car02g01023 Car-Chr2:7183833 Car20g00058 Car-Chr20:321250 1.06E-33 transposed
Car16g00775 Car-Chr16:4945950 Car20g00058 Car-Chr20:321250 1.51E-95 transposed
Car02g01022 Car-Chr2:7182309 Car20g00058 Car-Chr20:321250 5.64E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5320 PF00847 AP2 1.90E-08 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00058 K09285 - csv:101207097 890.952