Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car20g00061 | ATGACTGATCCCTACTCCATGCTTCACCCCTACTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAAATCTTACTCTCCTTATCATCATCTCTTCTCTCTTTCTTACTCTAATGATAACAATACCCTAAAAAACACATCCTCCTCCTCCTCCTCCTCTTTCACAACAACCCATGAATCATTTTCTCCTGATTCTTGTTCCTCCCCTCAAGTCCTTCCCCTTTTAAGCTTGAGCCCTGCAAGGCATGATCAAGAACATCACTCCTGTAGGCCTTGTGAAGACGAGGAGGATGAGGAGGAGGAGAGCGTTACTGTTGCTTTGCATTTAGGGCTTCCAACTCCTCCTTCTTCTGATCTGATCTTGAGGCTCTCTTCAACTGAGATCTCAGACAAGGAAGACCAACAAGAAGCTGTCCCTGTTGTTGTTCCTAATTACTACTCCTCCTCTACTGCTGGACTCAACAAGGGTCAGTATTGGATTCCCACTCCTGCTCAGATTCTCATTGGTCCAACTCACTTCTCTTGCCCTCTTTGCTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCACAGTCACTAAGAGGAACACAACCAACGGCGATGCTTAGGCTGCCATGTTACTGCTGTGCGCCAGGGTGCAGAAACAACATAGACCATCCAAGGTCCAAGCCATTGAAAGACTTCAGAACCCTTCAAACGCATTACAAAAGAAAGCATGGAATCAAGCCATTTACATGTAGAAAATGTGGGAAGGCCTTTGCTGTGAGAGGGGACTGGAGAACCCACGAGAAGAATTGTGGGAAGCTTTGGCATTGCACTTGTGGCTCTGATTTTAAGCACAAAAGGTCTCTCAAAGATCACATCAAGGCCTTTGGACATGGCCATGCAGCTTATGGGATTGACTCTTTTGACGAAGATGATGAGGCAGCTTCTGAGATTGAACATGATAATGACTTGTCTCTAAGGAATGGAGATTGA | 1023 | 45.06 | MTDPYSMLHPYFSSSSSSSSSSSSKSYSPYHHLFSLSYSNDNNTLKNTSSSSSSSFTTTHESFSPDSCSSPQVLPLLSLSPARHDQEHHSCRPCEDEEDEEEESVTVALHLGLPTPPSSDLILRLSSTEISDKEDQQEAVPVVVPNYYSSSTAGLNKGQYWIPTPAQILIGPTHFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGIDSFDEDDEAASEIEHDNDLSLRNGD | 340 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 336849 | 338885 | - | Carg06910-RA | Car20g00061 | 167920 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car20g00061 | 340 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 175 | 202 | IPR013087 | - | |
| Car20g00061 | 340 | MobiDBLite | consensus disorder prediction | 7 | 28 | - | - | |
| Car20g00061 | 340 | MobiDBLite | consensus disorder prediction | 44 | 70 | - | - | |
| Car20g00061 | 340 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 177 | 197 | IPR013087 | - | |
| Car20g00061 | 340 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 259 | 286 | IPR013087 | - | |
| Car20g00061 | 340 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car02g01028 | Car20g00061 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car05g00797 | Car-Chr5:7054905 | Car20g00061 | Car-Chr20:336849 | 2.12E-94 | dispersed | |
| Car06g00066 | Car-Chr6:433765 | Car20g00061 | Car-Chr20:336849 | 5.69E-130 | dispersed | |
| Car07g01248 | Car-Chr7:7736991 | Car20g00061 | Car-Chr20:336849 | 9.43E-129 | dispersed | |
| Car14g00406 | Car-Chr14:2050856 | Car20g00061 | Car-Chr20:336849 | 2.85E-117 | dispersed | |
| Car17g00906 | Car-Chr17:7471048 | Car20g00061 | Car-Chr20:336849 | 1.43E-113 | wgd | |
| Car02g01028 | Car-Chr2:7194320 | Car20g00061 | Car-Chr20:336849 | 4.47E-176 | wgd | |
| Car20g00061 | Car-Chr20:336849 | Car08g00444 | Car-Chr8:2896094 | 7.15E-113 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 5321 | None | None | None | None | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car20g00061 | - | - | bhj:120089206 | 478.789 |