Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00071 ATGCAGTCAAAGCCTAGAAGTGTGAATCAACTAGAATCTGAACCACCAAATATGCAGCAGACTAGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGATACAATCATATCTCCCCGCCAGCAGCAGGAGGAAATTTATCCAATTCAACATCACTGGAATGTCCTAATGGTGCCTCAGAATCTAATGACGGACCATCAATGTCAAATGATGATTTGAATGAAGATGATGATGATGACACCACAAAAGATTCACACGCTGTAAGTTATGGGCAAGTACAGAACAACAGTCAGCATGCTGTTTCTGCTGCACCTACAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCTATATCAGGATCCTTATTATGCTGGAGTGATGGCTGCCTATGGGCATCAACCGGGTTATCCTCCTTTTCTTGGGATGCCGCATGCTAGAATGGCTTTACCTCTTGAGGTGACACAGGAACCTGTTTTTGTGAATGCCAAACAATATCAAGGGATCCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAATTAGAAAGCCGTATCTTCATGAATCTCGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGAGGACGATTTGCCAAGAAAAATGAAGTTAATTCTTCAAGTTCTACTATGAAGAACAAGGACTCCGGTTCTGGTCAAGCTTTCTCGTCGCACTCTGCTGGTTCATCGGGTTCTGAAGCTGCGCCTTGTGCCTTGGCTGAAACCTGGAATTCTTCCAATGGCCAACAAGAAGCGAGGACGCAGTTGCATGAGGCGTACGAAGCTCGAAGTTATGTGAATGGCAGTGGACAATTTCATAATTACAGTAGCTTCCAAGCTTCCTCATATGCTTTACGGTCTGGTGAGAGAGGTGATGATGGAGACTGTTCGGGACAGCAACGAGGAAGCATCTCAGAAAATCAGGCAGCACAGAGGCGTCTTGCCATCAAGTGA 1032 45.64 MQSKPRSVNQLESEPPNMQQTSSYSEPWWRSIGYNHISPPAAGGNLSNSTSLECPNGASESNDGPSMSNDDLNEDDDDDTTKDSHAVSYGQVQNNSQHAVSAAPTVHGGCITQPPQLELVGHSIACASNLYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKIRKPYLHESRHQHAMRRARGSGGRFAKKNEVNSSSSTMKNKDSGSGQAFSSHSAGSSGSEAAPCALAETWNSSNGQQEARTQLHEAYEARSYVNGSGQFHNYSSFQASSYALRSGERGDDGDCSGQQRGSISENQAAQRRLAIK 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 380402 383261 + Carg06900-RA Car20g00071 167930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00071 343 MobiDBLite consensus disorder prediction 1 84 - -
Car20g00071 343 ProSitePatterns NF-YA/HAP2 subunit signature. 172 192 IPR018362 GO:0003677|GO:0016602
Car20g00071 343 MobiDBLite consensus disorder prediction 226 257 - -
Car20g00071 343 ProSiteProfiles NF-YA/HAP2 family profile. 167 227 IPR001289 GO:0003700|GO:0006355
Car20g00071 343 MobiDBLite consensus disorder prediction 207 221 - -
Car20g00071 343 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 169 224 IPR001289 GO:0003700|GO:0006355
Car20g00071 343 MobiDBLite consensus disorder prediction 41 68 - -
Car20g00071 343 MobiDBLite consensus disorder prediction 312 343 - -
Car20g00071 343 MobiDBLite consensus disorder prediction 207 259 - -
Car20g00071 343 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g01043 Car20g00071 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00841 Car-Chr10:4806683 Car20g00071 Car-Chr20:380402 1.43E-92 wgd
Car11g00728 Car-Chr11:4171458 Car20g00071 Car-Chr20:380402 2.20E-93 wgd
Car17g00912 Car-Chr17:7508377 Car20g00071 Car-Chr20:380402 1.19E-49 wgd
Car02g01043 Car-Chr2:7268882 Car20g00071 Car-Chr20:380402 0 wgd
Car20g00071 Car-Chr20:380402 Car08g00437 Car-Chr8:2837087 1.52E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5323 PF02045 CBFB_NFYA 4.50E-26 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00071 K08064 - csv:101212961 601.282