Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00109 ATGGAACAGAGGAAGTACGGAGCCGATCTTCTTTCACCGGCCTTCCTTGTCCTCCTCCTTTTCCTCTCCCTTTCCGGTCGATCCGCCGTTCACGCCTACAAGAACTACACCGTCGGAGACTCCCTCGGCTGGTTCGACAAATTGGAGAAACCTGCCGTTGATTATCAAAAATGGACAGTCGGCAAGAACTTCAGCCTCGGCGATTTTCTAATTTTTAACACCGACAACAATCACTCGGTTGTGCTTACGTATAATTTCACCACATACAAGCTATGCGACTACGACGACGCATCGGAACATGACACGACAGAATGGTCCGCTGCTGACCCGTCGGCGACCACTCCATACGCCGTGACGGTGGCCGTCCCACTGCTAAAAGAAGGGACCAACTATTTCTTCTCCGGCCACTACGACGGAGAGCAATGTCAAAATGGGCAACAATTCAAAATAAACGTCACTCACGGACAGGGCCTCCCGAAGAGCATGAGAGATTCTTCCGACGAAGCTCCCGCTCCTGTAGTTCCCGACACCGGCGACCAAACTGAATCTGCTCCCGACACCATTGTCCCTTCCAACTTCGACAATCCCGTAAACGACGTCACTGATAGCGACAAGGAGGTTTCGGGCTCCGTTTCGCTATCGCTTCACTCGAAGTTTAATGAGTTTTTCTTCGTGTTAGCTGGTATTGCCTCTGCCTGCATTTTTCTCTGTACTGAATGA 720 51.11 MEQRKYGADLLSPAFLVLLLFLSLSGRSAVHAYKNYTVGDSLGWFDKLEKPAVDYQKWTVGKNFSLGDFLIFNTDNNHSVVLTYNFTTYKLCDYDDASEHDTTEWSAADPSATTPYAVTVAVPLLKEGTNYFFSGHYDGEQCQNGQQFKINVTHGQGLPKSMRDSSDEAPAPVVPDTGDQTESAPDTIVPSNFDNPVNDVTDSDKEVSGSVSLSLHSKFNEFFFVLAGIASACIFLCTE 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 594928 597514 - Carg06862-RA Car20g00109 167968

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00109 239 ProSiteProfiles Phytocyanin domain profile. 34 154 IPR003245 GO:0009055
Car20g00109 239 Pfam Plastocyanin-like domain 44 146 IPR003245 GO:0009055
Car20g00109 239 MobiDBLite consensus disorder prediction 180 202 - -
Car20g00109 239 MobiDBLite consensus disorder prediction 157 202 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00109 - - - cpep:111776932 461.455
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00024 Car-Chr17:107091 Car20g00109 Car-Chr20:594928 1.17E-21 dispersed
Car20g00109 Car-Chr20:594928 Car05g00463 Car-Chr5:2643010 4.25E-13 dispersed
Car20g00109 Car-Chr20:594928 Car08g00831 Car-Chr8:5558158 9.24E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g956 . . . . . . . . . . . . . . . Cpe05g00463 . . . . . . . . Cla02g02197 Cam02g2342 Cec02g2381 Cco02g2423 Clacu02g2315 Cmu02g2248 Cre02g2575 . Cone5ag1429 . . . Csa06g02492 Chy05g00185 Cme05g00219 . . . . . . . . . . Cmo20g00135 . Cma20g00126 . Car20g00109 Cpe16g00842 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car18g00022 . 12 146 Phytocyanin Superfamily AT1G48940 55.5 1.7e-38 156.4
Car11g00976 CST 24 126 Phytocyanin Superfamily AT3G01070 67.3 2.1e-38 156.0
Car05g00293 CCT 7 171 Phytocyanin Superfamily AT2G25060 53.3 1.5e-42 169.9
Car14g00512 . 18 177 Phytocyanin Superfamily AT5G15350 50.3 1.7e-43 172.9
Car11g00976 CST 28 140 Phytocyanin Superfamily AT5G15350 60.2 6.1e-41 164.5
Car05g00293 CCT 16 171 Phytocyanin Superfamily AT4G31840 54.5 1.2e-44 176.8
Car17g00723 . 21 134 Phytocyanin Superfamily AT1G79800 57.0 1.3e-36 150.2
Car18g00022 . 12 146 Phytocyanin Superfamily AT1G48940 55.5 1.7e-38 156.4
Car17g00723 . 21 134 Phytocyanin Superfamily AT1G79800 57.0 1.3e-36 150.2
Car05g00293 CCT 9 170 Phytocyanin Superfamily AT5G25090 50.9 1.1e-38 157.1
Car05g00293 CCT 7 171 Phytocyanin Superfamily AT2G25060 53.3 1.5e-42 169.9
Car05g00293 CCT 16 171 Phytocyanin Superfamily AT4G31840 54.5 1.2e-44 176.8
Car11g00976 CST 24 126 Phytocyanin Superfamily AT3G01070 67.3 2.1e-38 156.0
Car14g00512 . 18 177 Phytocyanin Superfamily AT5G15350 50.3 1.7e-43 172.9
Car11g00976 CST 28 140 Phytocyanin Superfamily AT5G15350 60.2 6.1e-41 164.5
Car20g00109 . 19 229 Phytocyanin Superfamily AT1G08500 59.0 7.5e-63 237.7
Car10g00876 . 32 173 Phytocyanin Superfamily AT2G27035 54.2 4.0e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013663 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 0 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00109 Car_Chr20 FPKM 14.476809 12.530785 15.174934 13.270288 18.008276 20.437952 17.770067 23.492586 25.239784 24.265171