Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00116 ATGGCCGGATGGGCGTCTCTTGAGGGACGCCCCTTTGCTTGTCATGGCGTGAGGGTCACAACCTACTCTCTTCATAGTAAGTCATCGTCCTCGATGACTTTCTCGGGCGCGTTCGCCCCACCTATTGTGAAGTTCTCCCCCACTCAATCTCGGCATCGCCCCGATGACGATCCGACTCTCTTGCTCTCCCTGCTGACGTCTTATGCCAACTTGGGACAAGTTCGAGTGGATGCTTCTGACTTCTCTTTTGTCAGGTGGCACCACGTTCTGACTCTTGACTTGGCTTGTTCCTTTATCTACGGCTATCCCCATTCGGACCTAATTCTGTTGTTCGCCCATCTTGGACTCGGCCACCGAGACTCGCAACGTAGACGTGACTCTTCAGCGTTTGCCATAGTTGTGGGTGAGGCTGACTCTCTTTGCAGACACTCACCAGACAAGTATGGACTTCAGAGGGCACTTTTGCCCTATTTTGGCCAACTTGGCCCCATCTCTTCAGTTGTTGGCACTAACTTTCGGCCAACTCTTTGTATTTTGTCACATCGTGTGACTACTGTTGTGCGTGAACTTCCAGCTTGTTGCTCACTTCTCGAGCGGATACTGGTCTTGACATCTGTTGGTGGAGTCATCCACCCTAGGCACAAGGTGGTGACTCAAGGAATACACGTGTGCTCGTATGTCCGAGCACCTTTACGGGGTGAGAGACTTATTGATGTTGCTCTCCCCCGCTCGAACTCAGCTGCCTCTTTGCAGCAAGGTCGTCCCCCCATAAGGACTTACATTGTATACGGCTCTTGCACTCGGCCGAAGCTTGTCTTCTTTGACTCTCGGCTTCTCTGCTTGCAACCACTGACATTATTCCTCCAATGTGAATGGTTCTTTGGAAGGCACCGTCATGATGCTTTCTGTTTCATCTGTCTTGAATACTTCGAAACTGCAAGCTCTTCTCAGGAAAATTATATTAATTATAGGCCAAGCTCTGTTCGTAAGGATGACAATGGGGTCAAACGGATGGATTTGATTGCCTGTGCAGCTGATTCCATTGCAGATGGGGATATAATCAATAGCGTGATTATTGCATGGGCAAAGAAAACGCTGGAGCAGGTGATGAAATTCTGTACATACAAGGAGAGTGTAATTTTAACAGATTTGGTGCATGGCTGGGAAAAAAATTCAACATTTGGAAAACATATGAGGCTTTTGGAAGACTTTCATGTTCACATTCTTGCTTCTCGCGAGTCCTGTTCATGGAGGGAACACCTACAAGCTGAGAACCTTACTCTTTTTCTAAAGAGGTTGACTGAGCCACTGCGCAAGCTGCCTGAGAATGAAGCAGTTAAAATGGTTGTTGAGTTTATGAGTCTATATTCAATCAATCAGGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCATTGGATGGCGTGCCCCCTGCTGTGAAAGCTGCTCTAACAAAGGCATACAAAGAAGTAAGATTTGATCCGTCTTTTCGAGGTCAGCGGTTAGTGAATGAGTTGCGCTTGTTGGGCAAGTCCTGCTTCTCTAGTTGCCAATTATTCCTTGTCGCAATTATAGAAGACTCCACAAACGTGCAGTTGGAATTGAAAGGCGTGGAAAATTCAAGCGCCAAGAAATTCGGTGGCAGAGGAAGAGGAGGTAGTTCCCAGGATTCAAAGAAGAAAGGTGGGCGAGGTTCAGGATCTGCCACAAAGAGGAGAAAATGA 1743 47.33 MAGWASLEGRPFACHGVRVTTYSLHSKSSSSMTFSGAFAPPIVKFSPTQSRHRPDDDPTLLLSLLTSYANLGQVRVDASDFSFVRWHHVLTLDLACSFIYGYPHSDLILLFAHLGLGHRDSQRRRDSSAFAIVVGEADSLCRHSPDKYGLQRALLPYFGQLGPISSVVGTNFRPTLCILSHRVTTVVRELPACCSLLERILVLTSVGGVIHPRHKVVTQGIHVCSYVRAPLRGERLIDVALPRSNSAASLQQGRPPIRTYIVYGSCTRPKLVFFDSRLLCLQPLTLFLQCEWFFGRHRHDAFCFICLEYFETASSSQENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHGWEKNSTFGKHMRLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVRFDPSFRGQRLVNELRLLGKSCFSSCQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRGRGGSSQDSKKKGGRGSGSATKRRK 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 654652 658731 - Carg18398-RA Car20g00116 167975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00116 580 Pfam Replication factor RFC1 C terminal domain 388 495 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Car20g00116 580 MobiDBLite consensus disorder prediction 548 580 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01084 Car-Chr2:7519357 Car20g00116 Car-Chr20:654652 1.41E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00116 K10754 - csv:101204361 243.047