Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00128 ATGAGAATGGAAGAAGACGGCGGCGGCGATCTTGAAGTCCCCTCCTATTTCCTCTGCCCAATTTCCCTCCAATTGATGAGAGATCCGGTGACCATCTCCACCGGCATCACCTACGACCGATCCAACATCGAGAAATGGCTCTTCTCATGCAACAAGAGAACTTGCCCCATCACAAAACAGCCCTTGTCCGATCCCGATTTGGTAACCCCAAACCACACCCTTCGCCGTTTGATCCAAGCTTGGTGCACCCTCAATGCCTCTCATGGAGTTGAACGAATTCCAACTCCCAAGTCACCCATTGACAAAACCCATGTCGCCAAGATCCTCAAACAGGCCAAGAACTTCCCCAATTCCAACCACAAGTGCCTCCTTGCACTCAAAGCCATTGCCTTGGAGAGTGAAAGAAATTGCACCCTTGTGGCTCAATCCGATGGAGCTTTTGAGTTTGTGGCCGCCGTTATTAAGAGTGGTGGTGATAAGAACATTGGGTCCGTTGAATTGGCGGTGGAAATTCTGTTCCACATCAAATCCTCGGAAGCCCATCTCAAGAATCTCGTAAATGGCGATGGTAACTTCATAAACTCTCTTACTTTTGTCCTCAAAAATGGGAACTGCCAATCTAGAGCCTACGCCATAATGTTGCTCAAATCAAGCTTGGAACTTGCTGATCCAATTCGGTTGATGAGCATTGAGAGGGAACTTCTTACTGAAATTGTGCGCGTTATACATGATCATATATCTCACCAAGCCTCCAAATCCGCGTTGAAGGTTCTAGCCGAGGTGTGCCCTTGGGGGAGGAACCGTGTGAAAGCGGTCGAGGGCGGGGCAGTCGGCGTGTTGGTGGAGCTGCTTTTGAACTCGACCGAGAGGCGGTGGTCGGAGATAGGGCTGGTGATTTTGGATCAGCTGTGTGGGTGTGCGGAGGGACGAGAGAAGCTGATGGAACACGATGCTGGGGTTGCGATCGTGTCGAAGAAAATACTTAGGGTTTCGGCAATGGCAAGCGATCGAGCGGTGAGGATATTGTCATCAATATGTCGATTTTCAGCATCCAAAAAGATAGTTCAAGAAATGTTGGAGGTGGGAGTAGTGGCGAAACTGTGTTTGGTGTTGCAAATGGATTGTAGCTCGAAGACGAGAGAGAAGGCGAGGGATATACTGAAGTTGCATTCGAGGGTTTGGAATAATTCTTCTTGTATTCCGCCACATTTGGCGTCTGCTTATCCATCGTCATCGTCTTGA 1242 49.11 MRMEEDGGGDLEVPSYFLCPISLQLMRDPVTISTGITYDRSNIEKWLFSCNKRTCPITKQPLSDPDLVTPNHTLRRLIQAWCTLNASHGVERIPTPKSPIDKTHVAKILKQAKNFPNSNHKCLLALKAIALESERNCTLVAQSDGAFEFVAAVIKSGGDKNIGSVELAVEILFHIKSSEAHLKNLVNGDGNFINSLTFVLKNGNCQSRAYAIMLLKSSLELADPIRLMSIERELLTEIVRVIHDHISHQASKSALKVLAEVCPWGRNRVKAVEGGAVGVLVELLLNSTERRWSEIGLVILDQLCGCAEGREKLMEHDAGVAIVSKKILRVSAMASDRAVRILSSICRFSASKKIVQEMLEVGVVAKLCLVLQMDCSSKTREKARDILKLHSRVWNNSSCIPPHLASAYPSSSS 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 714388 715629 + Carg18410-RA Car20g00128 167987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00128 413 ProSiteProfiles U-box domain profile. 12 88 IPR003613 GO:0004842|GO:0016567
Car20g00128 413 Pfam U-box domain 13 83 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00454 Car-Chr4:2568607 Car20g00128 Car-Chr20:714388 6.01E-63 dispersed
Car04g00968 Car-Chr4:5584879 Car20g00128 Car-Chr20:714388 1.85E-54 dispersed
Car07g00775 Car-Chr7:4053735 Car20g00128 Car-Chr20:714388 2.24E-41 dispersed
Car07g01144 Car-Chr7:6877701 Car20g00128 Car-Chr20:714388 5.37E-131 dispersed
Car10g00786 Car-Chr10:4292229 Car20g00128 Car-Chr20:714388 9.52E-45 dispersed
Car10g00788 Car-Chr10:4296838 Car20g00128 Car-Chr20:714388 6.16E-93 dispersed
Car14g01751 Car-Chr14:13794696 Car20g00128 Car-Chr20:714388 3.16E-62 dispersed
Car17g00054 Car-Chr17:273496 Car20g00128 Car-Chr20:714388 8.19E-56 dispersed
Car11g00805 Car-Chr11:4761260 Car20g00128 Car-Chr20:714388 3.29E-90 wgd
Car20g00128 Car-Chr20:714388 Car06g00464 Car-Chr6:2564146 1.37E-143 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00128 - - csv:101203877 707.983