Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00129 ATGGCGACGTACTTTCACGGTGGTTCAGAAATCCAAGCCAATTCTGACGGAACTCACACTCTTTACCTTATGAACCCAAACTACGTACCTTACTCTGACACCCACTCTCAAACGCCACCCAATATGCTCTTTCTCAACCCTTCTGGACACGCGCTTAACCCTTCCACTCTCCCTCACGCGCCGCCTTCTAACAACCACTTCGTCGGAATTCCACTCTCCACCACCGACGCTCCACGTTCATCCTACGCTTCTCAATCCCATCACGAAATCTCAGCCCTCCATCCTATGCCATCTCAGCGTCTCCACTACAATCTATGGGCTCCTGTGGATCAACAAACCCACCACGGAATCTCCACCGTGTCGGCCACCACCGACTCTACCGATTTGTGCTTCCGCCGTCCGACGACACAACAGGGTTTGTCCTTGAGCCTCTCTTCCCAACAGTCGCTTTACCGGACGCTATCAGCGGAACAGGAGATTCAAGAAGGCGGTGGCGCTCCGGCAATCTCGCCGACGAGTGGGGATGATATTCGGGTGTCGGGAAATTCGCCGACGTCGGTGTCGGTGGTGTCAAGTGGAATTACGGGGGTTCAAAGTGTGATATTGGGATCCAAATACTTGAAAGCGGCACAAGAACTTTTGGATGAAGTGGTTAATGTTGGGAAAGGAAATTATAAAACCGACAAAGGGGATGGGACAAAGGACAAGATGAAGATGAAGAAAGAATCAACGGCTGCGATTGGAGGAGAGCCCTCCGGCGGTGGCGAAACCACTTCCAAGCCCGCCGCCGAGCTTAGCACTGCTCAAAGACAAGACCTTCAGATGAAGAAAGCTAAGCTTATTGGAATGCTTGATGAGGTGGAGCAAAAGTACAGACAGTACCACCAGCAAATGCTAGCAGTGGTCAATTGCTTCGAGCAGGCGGCAGGGTTGGGGTCAGCCAAGTCCTACGCCTCCCTCGCACTCGAAACCATTTCAAAGCAATTCCGGTGCTTAAAAGACGCAATATGTGCACAAATTAAAGCCACGGGCAAAAGCTTGGGCGAAGAGGATTGGTTGGGTGCCAAAATTGAAGGGTCAAGATTGAGATACGTGGACCATCATCTACGCCAACAAAGAGCTTTACAACAATTGGGTATGATTCAACACAACACTTGGAGACCCCAAAGAGGCTTGCCCGAACGTGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAGCATTTTCTTCACCCGTATCCAAAAGATTCAGACAAGATTATCCTCGCAAAACAAACGGGACTTACAAGGAGCCAAGTATCTAATTGGTTCATAAATGCAAGAGTTCGTCTATGGAAGCCAATGGTTGAGGAAATGTACTTGGAGGAAATCAAAGAACAAGAACAAAACGGGGATTCCCACGACATGCTTAGAACCAACAAAAACGAACCCAATAAGCAACATGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGATCAGATTAATAACAACAATATTAAGGATGATCATGCACAGTCCAAGACAGAAAATTTGATGAACAATCAAAACAATATCCATGCAAGTCCCAAGAAACAAAGAACAACGACCGCCGCAAACAACAACATGGAAACCCCATCCACAAAAACCATGCTTTTAAGGGATATCGACACAACAAAACACCTTCTTCAAACCACGGCAGAGATGAACATGAATCATCATCATTATCATGGGGGAGGGGGAGGATTTGGTGCATACCCAGTTGGTGAAATTGGAACAAGGTTCAATTCCGAGCTCCTCACACCACGATTCCATGGAAATGGCGTCTCTCTCACTCTTGGCCTTCCACATTCGGACACCCAACACAATTACCACTTGGGGAGAAGGCTTGATATCACCAATGGAGGAGGGCCCGATTTCTCCGACATCAATCCCGCTCCGCCCCCGCCCCCGCCGCCTCATTCTGCCTCGACTGCCTACGACCATGTCGAAATGCAAACCACCAAAAGGTTCGCCGCCCAATTATTGCCTGATTTTGTGGCTTGA 2019 49.48 MATYFHGGSEIQANSDGTHTLYLMNPNYVPYSDTHSQTPPNMLFLNPSGHALNPSTLPHAPPSNNHFVGIPLSTTDAPRSSYASQSHHEISALHPMPSQRLHYNLWAPVDQQTHHGISTVSATTDSTDLCFRRPTTQQGLSLSLSSQQSLYRTLSAEQEIQEGGGAPAISPTSGDDIRVSGNSPTSVSVVSSGITGVQSVILGSKYLKAAQELLDEVVNVGKGNYKTDKGDGTKDKMKMKKESTAAIGGEPSGGGETTSKPAAELSTAQRQDLQMKKAKLIGMLDEVEQKYRQYHQQMLAVVNCFEQAAGLGSAKSYASLALETISKQFRCLKDAICAQIKATGKSLGEEDWLGAKIEGSRLRYVDHHLRQQRALQQLGMIQHNTWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKIILAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKEQEQNGDSHDMLRTNKNEPNKQHGGGGGGGGGGDQINNNNIKDDHAQSKTENLMNNQNNIHASPKKQRTTTAANNNMETPSTKTMLLRDIDTTKHLLQTTAEMNMNHHHYHGGGGGFGAYPVGEIGTRFNSELLTPRFHGNGVSLTLGLPHSDTQHNYHLGRRLDITNGGGPDFSDINPAPPPPPPPHSASTAYDHVEMQTTKRFAAQLLPDFVA 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 717400 719992 - Carg18411-RA Car20g00129 167988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00129 672 MobiDBLite consensus disorder prediction 228 268 - -
Car20g00129 672 Pfam Associated with HOX 200 336 IPR006563 -
Car20g00129 672 MobiDBLite consensus disorder prediction 458 474 - -
Car20g00129 672 MobiDBLite consensus disorder prediction 514 540 - -
Car20g00129 672 Pfam Homeobox KN domain 403 442 IPR008422 GO:0003677|GO:0006355
Car20g00129 672 ProSiteProfiles 'Homeobox' domain profile. 383 446 IPR001356 GO:0003677
Car20g00129 672 MobiDBLite consensus disorder prediction 458 499 - -
Car20g00129 672 MobiDBLite consensus disorder prediction 228 243 - -
Car20g00129 672 MobiDBLite consensus disorder prediction 159 186 - -
Car20g00129 672 Coils Coil 270 297 - -
Car20g00129 672 MobiDBLite consensus disorder prediction 619 649 - -
Car20g00129 672 MobiDBLite consensus disorder prediction 633 647 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00922 Car-Chr3:7251035 Car20g00129 Car-Chr20:717400 1.38E-80 dispersed
Car14g00087 Car-Chr14:459051 Car20g00129 Car-Chr20:717400 1.97E-66 dispersed
Car20g00129 Car-Chr20:717400 Car20g00709 Car-Chr20:4092444 2.88E-90 dispersed
Car02g01093 Car-Chr2:7586077 Car20g00129 Car-Chr20:717400 0 wgd
Car20g00129 Car-Chr20:717400 Car06g00463 Car-Chr6:2556492 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5329 PF07526 POX 2.20E-46 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00129 - - cmax:111490715 857.44