Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car20g00133 | ATGTCGGGTTCTCGAGCTCCTAACTCCTCTGGACACCTTCCTGAGCAGATCATGCACTCTCTTAAGCGCCAGCTCCCCTTTTCTTCTATGAAACCGCCATTTGCATCTCCTGGGGACTATCACCGCTTCGCCCCGGACCCTCGACTCGCCGATCAAGAAGCTGACGCCATCGTAGTCAGATCTCCGTACATCACCGATGCTGGATATGAACAAACAATACTGGAAGTAACTATCTCAAGGGATGACATCATAACGGTGTTAGATGACTTGATCAAGTCGTGCAGTACCATTCAATTGAAGCGGAAGAGTGAGGTAGCAGATTATGAAGCTGACTCAACCGATAGAGCAGCTGGTCCTAGATTTTCTGAGGTAGCTAACAGTCCCCATCAAACACCTGTATCTGTGAAAGGAGGAAAGGGAAACAAATCAAGGCTTACTAAATGCAGTAGATCGGGGCCACAGACTCCCATGTCAAACGTTGGTTCACCTTCTGCCAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTAACAAAGAAGTTTATTAACCTGATCAAACAAGCGGAAGATGGTATTCTTGATCTCAATAAAGCAGCTGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTCGAAGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGACGTCTCAAGGTCAGGGGATGTCGATGACAATTATGCTGGTCTACAGGCAGAAGTAGAGAACCTTTCCATGGAGGAGCGTGGATTAGACGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGACGAGAACAACCAAAGGCAATAG | 882 | 45.69 | MSGSRAPNSSGHLPEQIMHSLKRQLPFSSMKPPFASPGDYHRFAPDPRLADQEADAIVVRSPYITDAGYEQTILEVTISRDDIITVLDDLIKSCSTIQLKRKSEVADYEADSTDRAAGPRFSEVANSPHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPSANNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQAEVENLSMEERGLDEQIREMQERLRDLSEDENNQRQ | 293 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 743144 | 749504 | + | Carg18415-RA | Car20g00133 | 167992 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car20g00133 | 293 | Coils | Coil | 191 | 211 | - | - | |
Car20g00133 | 293 | MobiDBLite | consensus disorder prediction | 110 | 170 | - | - | |
Car20g00133 | 293 | Coils | Coil | 253 | 293 | - | - | |
Car20g00133 | 293 | Pfam | E2F/DP family winged-helix DNA-binding domain | 177 | 240 | IPR003316 | GO:0005667|GO:0006355 | |
Car20g00133 | 293 | MobiDBLite | consensus disorder prediction | 144 | 170 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car02g01097 | Car20g00133 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car07g00815 | Car-Chr7:4316011 | Car20g00133 | Car-Chr20:743144 | 1.89E-63 | dispersed | |
Car12g00390 | Car-Chr12:2480051 | Car20g00133 | Car-Chr20:743144 | 5.39E-45 | dispersed | |
Car02g01097 | Car-Chr2:7609956 | Car20g00133 | Car-Chr20:743144 | 6.01E-164 | wgd | |
Car20g00133 | Car-Chr20:743144 | Car03g01015 | Car-Chr3:8427955 | 5.71E-74 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5330 | PF02319 | E2F_TDP | 6.00E-26 | CL0123 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car20g00133 | K06620 | - | csv:101219318 | 465.692 |