Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00133 ATGTCGGGTTCTCGAGCTCCTAACTCCTCTGGACACCTTCCTGAGCAGATCATGCACTCTCTTAAGCGCCAGCTCCCCTTTTCTTCTATGAAACCGCCATTTGCATCTCCTGGGGACTATCACCGCTTCGCCCCGGACCCTCGACTCGCCGATCAAGAAGCTGACGCCATCGTAGTCAGATCTCCGTACATCACCGATGCTGGATATGAACAAACAATACTGGAAGTAACTATCTCAAGGGATGACATCATAACGGTGTTAGATGACTTGATCAAGTCGTGCAGTACCATTCAATTGAAGCGGAAGAGTGAGGTAGCAGATTATGAAGCTGACTCAACCGATAGAGCAGCTGGTCCTAGATTTTCTGAGGTAGCTAACAGTCCCCATCAAACACCTGTATCTGTGAAAGGAGGAAAGGGAAACAAATCAAGGCTTACTAAATGCAGTAGATCGGGGCCACAGACTCCCATGTCAAACGTTGGTTCACCTTCTGCCAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTAACAAAGAAGTTTATTAACCTGATCAAACAAGCGGAAGATGGTATTCTTGATCTCAATAAAGCAGCTGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTCGAAGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGACGTCTCAAGGTCAGGGGATGTCGATGACAATTATGCTGGTCTACAGGCAGAAGTAGAGAACCTTTCCATGGAGGAGCGTGGATTAGACGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGACGAGAACAACCAAAGGCAATAG 882 45.69 MSGSRAPNSSGHLPEQIMHSLKRQLPFSSMKPPFASPGDYHRFAPDPRLADQEADAIVVRSPYITDAGYEQTILEVTISRDDIITVLDDLIKSCSTIQLKRKSEVADYEADSTDRAAGPRFSEVANSPHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPSANNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQAEVENLSMEERGLDEQIREMQERLRDLSEDENNQRQ 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 743144 749504 + Carg18415-RA Car20g00133 167992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00133 293 Coils Coil 191 211 - -
Car20g00133 293 MobiDBLite consensus disorder prediction 110 170 - -
Car20g00133 293 Coils Coil 253 293 - -
Car20g00133 293 Pfam E2F/DP family winged-helix DNA-binding domain 177 240 IPR003316 GO:0005667|GO:0006355
Car20g00133 293 MobiDBLite consensus disorder prediction 144 170 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g01097 Car20g00133 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00815 Car-Chr7:4316011 Car20g00133 Car-Chr20:743144 1.89E-63 dispersed
Car12g00390 Car-Chr12:2480051 Car20g00133 Car-Chr20:743144 5.39E-45 dispersed
Car02g01097 Car-Chr2:7609956 Car20g00133 Car-Chr20:743144 6.01E-164 wgd
Car20g00133 Car-Chr20:743144 Car03g01015 Car-Chr3:8427955 5.71E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5330 PF02319 E2F_TDP 6.00E-26 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00133 K06620 - csv:101219318 465.692