Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00144 ATGGCGGAAGAACATCGATGCCAAGCGCCGAAGCTCTGCGTTAATAACTGCGGATTCTTTGGGAGTCCGGCGACTCGAGATCTTTGTTCGAAGTGCTACCGAGATCTGCAGATGAAGGAACAACAATCTTCCTCCGCCAAGCTCGCGCTAAACCAAACCCTAACATCCGCCGTTACGTCATCCTCGTTCGCGGATGCCGCTTTGTTAGATCTGAAACCGGCTTCAACAGAAGCGAACCAGCCGCTGGCGGAGGTGGCAGAGAAGGCGCAGACGAGGACGGAAGTGGCGCCAGCACCGGCACAGCAGCAGCCGAGCCGGTGTATGACGTGCAGGCGGCGCGTGGGACTGACAGGGTTTAAGTGCAGGTGCGGGATGGTGTACTGTGGGACTCACCGGTACCCGGAGCAACACGGGTGTGAATTTGACTTCAAGCAGATGGGGAAGGATCAGATCGCAAAAGCGAATCCGGTGGTGAAAGGAGAGAAACTGCAGAAGATCTGA 501 56.49 MAEEHRCQAPKLCVNNCGFFGSPATRDLCSKCYRDLQMKEQQSSSAKLALNQTLTSAVTSSSFADAALLDLKPASTEANQPLAEVAEKAQTRTEVAPAPAQQQPSRCMTCRRRVGLTGFKCRCGMVYCGTHRYPEQHGCEFDFKQMGKDQIAKANPVVKGEKLQKI 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 794304 794804 + Carg18426-RA Car20g00144 168003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00144 166 SUPERFAMILY AN1-like Zinc finger 92 161 IPR035896 -
Car20g00144 166 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 54 - -
Car20g00144 166 Pfam A20-like zinc finger 12 34 IPR002653 GO:0003677|GO:0008270
Car20g00144 166 Gene3D - 80 162 IPR035896 -
Car20g00144 166 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Car20g00144 166 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Car20g00144 166 Pfam AN1-like Zinc finger 107 143 IPR000058 GO:0008270
Car20g00144 166 Gene3D - 1 60 - -
Car20g00144 166 ProSiteProfiles Zinc finger AN1-type profile. 101 147 IPR000058 GO:0008270
Car20g00144 166 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 1 166 - -
Car20g00144 166 SMART AN1_Zf_4 107 144 IPR000058 GO:0008270
Car20g00144 166 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01050 Car-Chr3:8588015 Car20g00144 Car-Chr20:794304 6.35E-60 dispersed
Car07g00846 Car-Chr7:4478844 Car20g00144 Car-Chr20:794304 2.44E-61 dispersed
Car10g00850 Car-Chr10:4862033 Car20g00144 Car-Chr20:794304 6.35E-44 dispersed
Car11g00721 Car-Chr11:4134932 Car20g00144 Car-Chr20:794304 1.64E-42 dispersed
Car15g01065 Car-Chr15:8381803 Car20g00144 Car-Chr20:794304 2.15E-44 dispersed
Car16g00150 Car-Chr16:850773 Car20g00144 Car-Chr20:794304 2.97E-25 dispersed
Car17g00901 Car-Chr17:7457149 Car20g00144 Car-Chr20:794304 2.72E-44 dispersed
Car20g00059 Car-Chr20:326985 Car20g00144 Car-Chr20:794304 3.54E-41 dispersed
Car02g01113 Car-Chr2:7676480 Car20g00144 Car-Chr20:794304 8.29E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00144 - - csv:101219115 251.521