Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00162 ATGGATGAAGGTAAAGATACCGATCATGATCATGTTCGCCGGCGACAGGGGAAGCCGCGGCGGCCTTTTAACAACATCCCCGACCCTCAAAATCATCACCCAATTTCTCATCCTTCATTTCCTTTCTTCAATCCACCCTCCTCTGTTTCTCACGCTTCCTCTTCTTCTGTAACACCTCTCTTTCCGTTTCCTTTCCAACCATCCCAATTCCCTCATCAATCCAAAACAGAGCTTGTAGAGCCTGTAGCGCCTGTAGCGCCTGTGGTTCATCACCGACCGTCAGTCCGGCCGCAATTGGCGCCGATCGCTTCGACCCAACATGGATTTAGCTTCGGTTACCCACCCTACTTCATGGGAGAGTTTGCATCGTTTCAACAGCAACAACAACAACATCAGCAATTTCTTCAGCACTGGAATGAGTCTCTTAATTTAAACACAAGGGCAGCAGGGATTAGACCTCAAGTGCGGCCTTTAAATACCACGAAGCTATACAGAGGAGTGAGGCAGAGACATTGGGGGAAATGGGTAGCTGAGATTCGTCTTCCTCGAAACAGGAATCGTCTCTGGCTTGGCACATTCGACACTGCAGAAGACGCTGCCTTGGCCTACGATCGTGAGGCTTTCAAGTTGAGAGGAGCGAATGCAAGGCTTAATTTTCCAGAACTATTTCTAAATAAAGATAATAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGCCTCGCAGGCTCCTCAACAGGATGTTGACAATGACATAGAATTAGAGTCCAATAATAATGAGGCTGTGACAGAGGACAACATACAAGAGGCAGAGGGTGTTTCAAACTCACAGGAAATGGTTTGGAGAGAAATAGCAGAGGCTTGGTTAAACGCGATGCCAGCCGGTTGGGGCCCAGGTAGCCCTGTGTGGGACGACTTGGACACCACCAATAATCTGCTGCTGCAGCCACAGCCTTCATATGGCTCTGATCTTCAGAGACCCCCAGTTTCACCTTCTTCCTCATCCTGCCCCATGAAGCCCTTCTTTCACAAGGATGAAGATTAA 1056 48.11 MDEGKDTDHDHVRRRQGKPRRPFNNIPDPQNHHPISHPSFPFFNPPSSVSHASSSSVTPLFPFPFQPSQFPHQSKTELVEPVAPVAPVVHHRPSVRPQLAPIASTQHGFSFGYPPYFMGEFASFQQQQQQHQQFLQHWNESLNLNTRAAGIRPQVRPLNTTKLYRGVRQRHWGKWVAEIRLPRNRNRLWLGTFDTAEDAALAYDREAFKLRGANARLNFPELFLNKDNKEEEEEEEEEEEEEEASQAPQQDVDNDIELESNNNEAVTEDNIQEAEGVSNSQEMVWREIAEAWLNAMPAGWGPGSPVWDDLDTTNNLLLQPQPSYGSDLQRPPVSPSSSSCPMKPFFHKDED 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 903236 904291 + Carg18444-RA Car20g00162 168021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00162 351 ProSiteProfiles AP2/ERF domain profile. 163 220 IPR001471 GO:0003700|GO:0006355
Car20g00162 351 MobiDBLite consensus disorder prediction 223 255 - -
Car20g00162 351 MobiDBLite consensus disorder prediction 228 248 - -
Car20g00162 351 MobiDBLite consensus disorder prediction 302 351 - -
Car20g00162 351 MobiDBLite consensus disorder prediction 308 341 - -
Car20g00162 351 Pfam AP2 domain 164 212 IPR001471 GO:0003700|GO:0006355
Car20g00162 351 Coils Coil 221 250 - -
Car20g00162 351 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00086 Car-Chr17:500173 Car20g00162 Car-Chr20:903236 1.48E-25 dispersed
Car20g00162 Car-Chr20:903236 Car09g00582 Car-Chr9:3296296 8.55E-26 dispersed
Car19g00773 Car-Chr19:8464077 Car20g00162 Car-Chr20:903236 1.13E-16 wgd
Car02g00094 Car-Chr2:600942 Car20g00162 Car-Chr20:903236 2.14E-125 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5333 PF00847 AP2 6.70E-13 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00162 - - cpep:111795746 394.43