Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00166 ATGCATCTCCTCCTCCACTGCCGTGGTTTTCGGCTCGTTAGAGCTTTGTTCTGTGCTGCGGCTGTGCTTGAGTGGTTCACGGCGACGGCTCAGCTCCAACACCATGTGGCGGATCTACATTGGCTTCCAGCCACCGCCACGTGGTACGGAAGTCCCGAGGGAGACGGTAGCGACGGTGGAGCATGTGGGTATGGTAATTTAGTGGATGTGAAGCCTCTAAAGGCAAGAGTTGGGGCTGTGAGTCCAGTTCTGTTCAGAAATGGCGAAGGTTGTGGAGCTTGTTACAAAGTAAAGTGTTTAGACAACAACATTTGCTCTAGACGAGCAGTGACTATAATCGTCACCGACGAATGCCCCGGTGGGTATTGTTCCAATGGAAACACCCACTTCGATCTGAGCGGCGCCGCCTTCGGCCGCATGGCCATCACCGGCGAAGGTGGGCAGCTCAGAAACCGAGGCGAAATCCCAGTTATTTACCGACGGACGCCGTGTAAGTACCCAGGCAAGCACATTGCGTTCCATGTCAATGAAGGGTCGACAGATTACTGGCTCTCACTCTTGGTTGAATTCGAGGACGGCGATGGCGACATCGGCGCAATGCAAATCAAAGAAGCAGGGTCGGCGGGGGAGTGGGTGGATATGAACCATCTGTGGGGGGCAAATTGGTGCATCATTGGAGGGCCTTTAAAGGGGCCATTCTCAGTGAGACTAACAACGTTGTCGACAGGAAGAAGCCTCTCAGCAAGGGATATAATCCCAAGGAACTGGTCTCCCAAAGCCACTTACACTTCCAGACTTAATTTCTTCTCTTAA 813 53.01 MHLLLHCRGFRLVRALFCAAAVLEWFTATAQLQHHVADLHWLPATATWYGSPEGDGSDGGACGYGNLVDVKPLKARVGAVSPVLFRNGEGCGACYKVKCLDNNICSRRAVTIIVTDECPGGYCSNGNTHFDLSGAAFGRMAITGEGGQLRNRGEIPVIYRRTPCKYPGKHIAFHVNEGSTDYWLSLLVEFEDGDGDIGAMQIKEAGSAGEWVDMNHLWGANWCIIGGPLKGPFSVRLTTLSTGRSLSARDIIPRNWSPKATYTSRLNFFS 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 913776 915192 - Carg18448-RA Car20g00166 168025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00166 270 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576
Car20g00166 270 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Car20g00166 270 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576
Car20g00166 270 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Car20g00166 270 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576
Car20g00166 270 PRINTS Expansin/Lol pI family signature 250 264 IPR007118 GO:0005576
Car20g00166 270 Pfam Expansin C-terminal domain 171 253 IPR007117 -
Car20g00166 270 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 264 IPR007117 -
Car20g00166 270 SMART dpbb_1 77 159 IPR007112 -
Car20g00166 270 PANTHER EXPANSIN-LIKE PROTEIN B1 18 269 - -
Car20g00166 270 SUPERFAMILY PHL pollen allergen 169 264 IPR036749 -
Car20g00166 270 Gene3D - 26 165 IPR036908 -
Car20g00166 270 PANTHER EXPANSIN-B3 18 269 - -
Car20g00166 270 SUPERFAMILY Barwin-like endoglucanases 38 168 IPR036908 -
Car20g00166 270 PRINTS Major pollen allergen Lol pI signature 79 90 IPR005795 GO:0005576|GO:0019953
Car20g00166 270 PRINTS Major pollen allergen Lol pI signature 119 134 IPR005795 GO:0005576|GO:0019953
Car20g00166 270 PRINTS Major pollen allergen Lol pI signature 141 156 IPR005795 GO:0005576|GO:0019953
Car20g00166 270 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576|GO:0019953
Car20g00166 270 PRINTS Major pollen allergen Lol pI signature 189 204 IPR005795 GO:0005576|GO:0019953
Car20g00166 270 PRINTS Major pollen allergen Lol pI signature 240 257 IPR005795 GO:0005576|GO:0019953
Car20g00166 270 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 169 IPR007112 -
Car20g00166 270 Gene3D - 166 269 IPR036749 -
Car20g00166 270 Pfam Lytic transglycolase 79 158 IPR009009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g01561 Car20g00166 CCT
Car02g00090 Car20g00166 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00807 Car-Chr6:6226708 Car20g00166 Car-Chr20:913776 9.32E-79 dispersed
Car12g00621 Car-Chr12:4215542 Car20g00166 Car-Chr20:913776 7.39E-77 dispersed
Car20g00166 Car-Chr20:913776 Car01g00437 Car-Chr1:2498011 7.96E-37 dispersed
Car11g01561 Car-Chr11:12429556 Car20g00166 Car-Chr20:913776 1.59E-105 wgd
Car02g00090 Car-Chr2:582178 Car20g00166 Car-Chr20:913776 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00166 K20628 - csv:101202998 505.753