Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00175 ATGGGTTGCATCTGTTCTAAGGTTTTACCGGATGAGTGTAGTGAACATGAACATGATAGCTCCAATAGAGCATATTCCTCCAGAAAACACCTCTCTGAATTGAAAATATCAAGAGCTGGCTTTCCCAAATCAGAGAAGATTTGGGAAAAAGATAGACTAGATTGTAGCGATGTTTCGGTTATGTTGTTCGATACGAAGGCGAACGGTCCTCTGCGCTCGCACGGTGAGCTTCCCAATGAGAGGAAGAAGAAGGCAGACGTCCCTGATATCACCATTGTCACTCATCCATGTATGGGAAAGATTCCGAATGTTACCGAAGCCGAGCAGATTGGCCAGGGAACTTATAGCAGTGTGTATAAAGCTCGTGATATCATTCAGGATAAAGTTGTGGCCTTGAAACGGATCAGGTTTGACAATCAAGACGCCGAGAGTATCGCGTTCATGGCTAGGGAAATCCTTGTTTTGCGAAGGCTTGATCATCCAAATATAGTTAAGTTGGAAGGACTTGCATCTCGGCCTGGCACGTCGTTCACCGAACCACAGATGAAGTGTTACATGAAGCAACTTTTGAGCGGACTTGCTCACTGTCACAGTAATGGGGTTCTGCATAGAGACATAAAGGGCTCAAATCTTCTTATTGACAACCATGGCGTTTTGAAGATAGCAGACTTTGGGTTGGCTGTTTTCTATGATTCGCAGTCGACGGTTCCCATGACGAGTCGTACGTACGAACGATGTCTTCGAGAAAGATATGACGACATTCCTCATGCTGCTATTGAGCTCATGGACAATTTGCTGTCTATAGATCCTGCAGAGCGAGGAACTGCAGCTTCCGCACTCGACAGCGAGTTCTTTAGCACAAGGCCCTTGCCATGCAATCCTTCAAGTTTGCCGAAGTACCCTCCTAGCAAAGAAATCAATTCAAAACTGCGGGAAGAGGAAGCGAGAAGGCAACGAGGAGTAGGTGGCGGGAGAAGCCGAGCAGTCGACGCCGAACTAAAAGGACTGAAGCAATCTCGGGTAGTTCCTACTGCAAAGGCTAACTCTGAGTTGGTTATTTCACTTCTGCGTTGGCTTCAAGAGGAGATTGTAATTTCTGAAGAAACTTACAATTTTGTTGTTAGTTTCTGGGCTGCAATTATGGGTTGCCAATGTTCCAAGCCATCTGTTCATGAAGATGAACAGAGCAGAGCCTCTGAGAAATTGCCTTCACTAAAGGCTTCAGGGGTTAATTTTTCAAGGAAAGAGGAGGATGTGCAATTCAATTCCGTGAAGAGGGACCAAGGTGTTCGACTAAATGCCTCACAGAGAGCTGATGGTATTCGATCGAAGCTGAAACCAGAAGGTGGTGACTTGAAGGTTGCTTACTTAGATAAGAGGGTCAACGGCTCAAACAGGGTACATGATGATCAAATTGAGAAAAAGAAGAGGGAGAGGTTGGAAGCAGCCATTTCTGCTAATTATCCTGGTAAAGGAAGCATTCCAAAGGCTATGGAAGCTGAGCAAGTTGCAGCTGGTTGGCCTAGCTGGCTTTCCTCTGTGGCTGGTGAAGCGCTCGAGGGATGGCTGCCACGAAAAGCCGAAACGTTCGAGAAACTAGACAAGATAGGACAAGGAACATATAGTAGTGTTTACAAGGCTCGTGATATCATTCACGGTAAACTAGTCGCTCTAAAACGAGTTCGATTCGATAATCTTGATGTGGAGAGTGTGAAGTTTATGGCCCGGGAAATCCTTATCCTACGTAGACTTGATCATCCAAACGTTATAAAATTGGAAGGCTTGATTACGTCTCCACGATCATGTAGCTTGTACCTCATTTTTGAGTATATGGAGCACGATCTTACAGGGCTCGCATCTCGGCCCGGCGTCAAGTTCAGCGAACCACAGGTTAAATGCTATATGCAACAACTTCTAAGGGGGCTTGATTATTGCCACAGTCATGGTGTCCTCCACCGCGATATAAAGGGTTCGAATCTCCTAATCGATGCCAATGGTATCTTGAAGATTGCAGATTTTGGACTAGCAAGCCATTTTGACCCTCATAATCATGTTCCCTTAACAAGTCGCGTAGTGACTCTATGGTACCGACCACCCGAACTTCTTCTTGGAGCTTCTCATTATGGTGTTGCAGTGGACCTGTGGAGTACTGGTTGCATACTAGCTGAGCTATATGCTGGGAAGCCCATCTTGCCTGGAAAAACAGAGGTCGAACAGTTGCATAAGATATTTAAACTTTGTGGGTCGCCACCCGAGAATTATTGGAGGAAATTGCAGTTACCTCATTCAACTGGATTCAAGACGGCTCAGCCATACCGACGTTGTGTCGTGGAAATGCTCAAGGATTTCCCATCTTCTGCGGTGGCTCTCGTGGATAAGTTGCTATCTATAGATCCTGCTCATCGAGGAACTGCAGCCGCTGCCTTAAAGAGCGAGTTTTTTACGACTAAACCGCTTGCTTGCGACCCTTCGAGTTTGCCCAAATATCCTCCGAGCAAAGAGATCGATGCAAAATTCCACAGCTGCAGGGGACAAAACCAATCTGTCACAGAAATTTGTTCAGATACAGGCAGGATTTCACATTCAGGACCGCTAATTAGCAGACCAGATTGGATGAAATCAAGAAAGCAACTTGATGATCATTCAATGTTGCTTGATGGATCCAATCTCTCAGTGTTATCCCGTTTAGTAGCGACGAGGTCTAATACATCTGAACATCCCTACGATAGACCGGGTCCATCACGATCAGAAGTAGGCAGATTGCCTGACTTCGTTAGGGAGTCTGAGTCAACAAGAAAGCAGGACCGAGAATTTTATGCACATCGTGGTGCAGATTCATACCGGATAGAGAATGAAAAAGCTCGTGCTAAAGAACAGTCCCCGTTTGCTTATGGGACAGACATGAACAAGCTTTATACCTCTGGTCCACTCCTTGGTCCATCAAACAACTTGGATAAAATTCTAAAAGAGAAAGACCGTCAAATTCAAGAATATGCTCGACAAGCACGACATGGTAAAGCTGCTAACATTCAGTCAAAGGGTTCGAGAGCAACAACTGGAAAACATCTCATGTTGAGCCATGGAGTATGA 3090 45.5 MGCICSKVLPDECSEHEHDSSNRAYSSRKHLSELKISRAGFPKSEKIWEKDRLDCSDVSVMLFDTKANGPLRSHGELPNERKKKADVPDITIVTHPCMGKIPNVTEAEQIGQGTYSSVYKARDIIQDKVVALKRIRFDNQDAESIAFMAREILVLRRLDHPNIVKLEGLASRPGTSFTEPQMKCYMKQLLSGLAHCHSNGVLHRDIKGSNLLIDNHGVLKIADFGLAVFYDSQSTVPMTSRTYERCLRERYDDIPHAAIELMDNLLSIDPAERGTAASALDSEFFSTRPLPCNPSSLPKYPPSKEINSKLREEEARRQRGVGGGRSRAVDAELKGLKQSRVVPTAKANSELVISLLRWLQEEIVISEETYNFVVSFWAAIMGCQCSKPSVHEDEQSRASEKLPSLKASGVNFSRKEEDVQFNSVKRDQGVRLNASQRADGIRSKLKPEGGDLKVAYLDKRVNGSNRVHDDQIEKKKRERLEAAISANYPGKGSIPKAMEAEQVAAGWPSWLSSVAGEALEGWLPRKAETFEKLDKIGQGTYSSVYKARDIIHGKLVALKRVRFDNLDVESVKFMAREILILRRLDHPNVIKLEGLITSPRSCSLYLIFEYMEHDLTGLASRPGVKFSEPQVKCYMQQLLRGLDYCHSHGVLHRDIKGSNLLIDANGILKIADFGLASHFDPHNHVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSTGCILAELYAGKPILPGKTEVEQLHKIFKLCGSPPENYWRKLQLPHSTGFKTAQPYRRCVVEMLKDFPSSAVALVDKLLSIDPAHRGTAAAALKSEFFTTKPLACDPSSLPKYPPSKEIDAKFHSCRGQNQSVTEICSDTGRISHSGPLISRPDWMKSRKQLDDHSMLLDGSNLSVLSRLVATRSNTSEHPYDRPGPSRSEVGRLPDFVRESESTRKQDREFYAHRGADSYRIENEKARAKEQSPFAYGTDMNKLYTSGPLLGPSNNLDKILKEKDRQIQEYARQARHGKAANIQSKGSRATTGKHLMLSHGV 1029
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 952919 961211 + Carg18457-RA Car20g00175 168034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00175 1029 MobiDBLite consensus disorder prediction 293 326 - -
Car20g00175 1029 ProSitePatterns Protein kinases ATP-binding region signature. 536 559 IPR017441 GO:0005524
Car20g00175 1029 MobiDBLite consensus disorder prediction 1005 1029 - -
Car20g00175 1029 MobiDBLite consensus disorder prediction 901 933 - -
Car20g00175 1029 ProSiteProfiles Protein kinase domain profile. 530 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car20g00175 1029 Coils Coil 981 1001 - -
Car20g00175 1029 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Car20g00175 1029 Pfam Protein kinase domain 106 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car20g00175 1029 Pfam Protein kinase domain 175 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car20g00175 1029 Pfam Protein kinase domain 530 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car20g00175 1029 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
Car20g00175 1029 MobiDBLite consensus disorder prediction 305 323 - -
Car20g00175 1029 ProSitePatterns Serine/Threonine protein kinases active-site signature. 650 662 IPR008271 GO:0004672|GO:0006468
Car20g00175 1029 ProSiteProfiles Protein kinase domain profile. 104 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car19g00784 Car20g00175 CCT
Car11g01570 Car20g00175 CCT
Car19g00784 Car20g00175 ECH
Car11g01570 Car20g00175 ECH
Car02g00082 Car20g00175 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00518 Car-Chr4:2917917 Car20g00175 Car-Chr20:952919 5.75E-18 dispersed
Car16g00361 Car-Chr16:2244419 Car20g00175 Car-Chr20:952919 7.68E-19 dispersed
Car20g00175 Car-Chr20:952919 Car12g01072 Car-Chr12:10502659 1.24E-25 dispersed
Car02g00082 Car-Chr2:545090 Car20g00175 Car-Chr20:952919 2.45E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89592 PF00069 Pkinase 1.00E-67 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00175 - - csv:101207826 1029.24