Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00185 ATGGAGGATCAGCGAGACGATGTTGCACCATCAGAGCAAGGGACTTCCAATGCTTCCTGGTGGTCTTCTGATTTTGTGGAGAAATTTGGATCTGTTTCTTTGGGTCCTCGGGAAGACATTGTGAGTGAAAGGGAAGAGATCATCAATTCTGACCAAGATGTGTTGTTGTCGCCTCAGAGAGCATCTCAAATTCTCTGGCGTACTGGAATGCTTTGTGAACCAATTCCAGATGGTTTCTATTATGTTATTCCGGATAAGAGGCTAAAAGAGCGGTTCCACAGTATTCCTTCGTTAGATGAGCTTCGTGCTTTGGAGGCCGAAGGTTACAGAAACGATGTTATTCTTGTGGAGCCAGAGAAAGATAAAAAGCTTTCTATGCTGAAGCAACTGATCTCAACACTGATTAAAGGCGTGAGTTCAAATCCAGCTGCAATTATCAAGAAGATTGCTGGACTGGTTTCTGATTTTTATAAACGACCAATTTTAGAAAGTCCAGCAAAAGCTGCTGTAGAAGATGCCAACCACTTGTTTGAGGATAGAGGCATTCAGTTGCTCGGTCAAATAAAATTTGGTTCTTGCCGTCCTAGAGCTATCTTATTTAAGGTTCTGGCGGACACTGTAGGGCTTGAAAGTCGTCTCATGATGGGCTTGCCAAATGAGGGGGCTAATGGGTGCGTGGACTCATACAAGCACATGTCGGTGACAGTTGTGTTGAATTCTGTCGAACTAGTTGTTGATCTGATGCGATTTCCTGGCCAGTTGTTACCTCAGTCAACTAAGGCAATTTTTATGACACATATTTCCGCTGCTGGGGAAAGCGATTCTGCAGAAAACGACTCATGTGATTCACCACTAGAACCTAACAGTCCTCTTTATGGTTTCTCAGAAAGAGTTGATCTTGACAGTGGTGAAAAAGATGAGAGCCTTCAATTCCACAGAAAAATTGAAGCAGCTTCAAATGCATATGCTCCTTCATTGCGCAATATGATGTTGCGATCAAGTACAACACTCGACAGGAAAATGAGTTTATCACATAGTGAACCTAACATTGCAAATGCATTTTGGCGAAGTTGTCGGAGAAAAGATATTGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAGCATCCTTCATTTCGGGCGCGAGGCCGGTCCATGCTTAGTGGGGATAGGAAAGCCTTCAGAGATTTTTCTGATGATGTCTCTACTTCAAGATCAGATGGTGCTTCAACTTCAACTTCCACTTCCACTTCGGCTTCAAATTCAGAAGCACGTCGATTAAGAAGAAGGAGCATCAGCATTACTCCAGAGATTGGTGATGATATCGTGAGGGCTGTACGAGCAATGAATGAAACACTGAAGCAAAATCGTCTTTTGAGAGAACAAGTAGATGACAGGTCGTTCTCCCACCCTTCAAATGAAAGAAATAATAGTTCAGATGTTCGGAGAAATGATCAAGTGGGTTCTCAAAGAGCAATATCATTACCGTCATCGCCACATGATTATAGGGGTCAAACCTCTGATAGAAGTGGGCATTCAGCATGGACTAAAGTTCTTGAATCATTCTCCTTGAACGACAAACCCCTATTACCTTACCCCGAGTGGAATATCGATTACTCAGAACTGACAGTTGGAATCCGTATTGGAATCGGGTTTTTTGGAGAAGTTTTTCGTGGCATTTGGAATGGGACGGATGTGGCAATCAAAGTTTTCCTAGAGCAAGATCTAACTCCTGAAAACATTGAGGACTTCTGTAATGAGATATTAATTCTTAGTCGTCTTCGACATCCTAATGTTATATTATTTCTGGGCGCATGTACAGAACCGCCACGCTTGTCGATGATCACAGAATATATGGAGCTGGGTTCCTTGTATTCCTTGATCCATTTGAGTGGTCAGAAAAAAAAACTTAGCTGGCGGAGGAGACTGAAGATGTTGCGTGACATATGCAGGGGTTTGATGTGCATACACCGAATGAAAATAGCTCACCGGGACCTGAAAAGTGCAAATTGCCTTGTCAACAAGCATTGGACCGTCAAGATATGTGATTTTGGACTTTCAAGAATATTGACAGATGCTCCAGCAAGAGGGTCTCCATCTGCAGGAACTCCAGAATGGATGGCTCCTGAGCTCTTTCGAAACGAACCCTTCACTGAAAAGTGTGATATTTTCAGCCTGGGGGTCATCATGTGGGAGCTTTGCACGCTAAGTAGACCATGGGAGGGTGTTCCACCGGAGCGGGTAGTTTATGCTGTTGGCACTGAGGGATCCCGCCTAGAGATTCCTGAAGGCCCGCTTGGCAGGCTTATATCAGATTGTTGGGCAGAACCGAATGAGCGGCCAAGCTGCGAAGAGATTGTCACCCGCTTGCTCGATTGCGAGTACTCACTTTCTTGA 2394 44.24 MEDQRDDVAPSEQGTSNASWWSSDFVEKFGSVSLGPREDIVSEREEIINSDQDVLLSPQRASQILWRTGMLCEPIPDGFYYVIPDKRLKERFHSIPSLDELRALEAEGYRNDVILVEPEKDKKLSMLKQLISTLIKGVSSNPAAIIKKIAGLVSDFYKRPILESPAKAAVEDANHLFEDRGIQLLGQIKFGSCRPRAILFKVLADTVGLESRLMMGLPNEGANGCVDSYKHMSVTVVLNSVELVVDLMRFPGQLLPQSTKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFSERVDLDSGEKDESLQFHRKIEAASNAYAPSLRNMMLRSSTTLDRKMSLSHSEPNIANAFWRSCRRKDIAEQRTASSSPEHPSFRARGRSMLSGDRKAFRDFSDDVSTSRSDGASTSTSTSTSASNSEARRLRRRSISITPEIGDDIVRAVRAMNETLKQNRLLREQVDDRSFSHPSNERNNSSDVRRNDQVGSQRAISLPSSPHDYRGQTSDRSGHSAWTKVLESFSLNDKPLLPYPEWNIDYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTPENIEDFCNEILILSRLRHPNVILFLGACTEPPRLSMITEYMELGSLYSLIHLSGQKKKLSWRRRLKMLRDICRGLMCIHRMKIAHRDLKSANCLVNKHWTVKICDFGLSRILTDAPARGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWELCTLSRPWEGVPPERVVYAVGTEGSRLEIPEGPLGRLISDCWAEPNERPSCEEIVTRLLDCEYSLS 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1028580 1037585 + Carg18467-RA Car20g00185 168044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00185 797 MobiDBLite consensus disorder prediction 384 401 - -
Car20g00185 797 ProSitePatterns Protein kinases ATP-binding region signature. 547 568 IPR017441 GO:0005524
Car20g00185 797 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 29 795 - -
Car20g00185 797 MobiDBLite consensus disorder prediction 456 509 - -
Car20g00185 797 CDD STKc_MAP3K-like 547 789 - -
Car20g00185 797 Gene3D Transferase(Phosphotransferase) domain 1 620 796 - -
Car20g00185 797 PANTHER MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE-LIKE PROTEIN-RELATED 29 795 - -
Car20g00185 797 SUPERFAMILY Protein kinase-like (PK-like) 514 788 IPR011009 -
Car20g00185 797 SMART serkin_6 541 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car20g00185 797 Pfam Ethylene-responsive protein kinase Le-CTR1 59 254 - -
Car20g00185 797 MobiDBLite consensus disorder prediction 402 421 - -
Car20g00185 797 ProSitePatterns Serine/Threonine protein kinases active-site signature. 660 672 IPR008271 GO:0004672|GO:0006468
Car20g00185 797 MobiDBLite consensus disorder prediction 456 480 - -
Car20g00185 797 MobiDBLite consensus disorder prediction 481 509 - -
Car20g00185 797 Pfam Protein tyrosine and serine/threonine kinase 542 789 IPR001245 GO:0004672|GO:0006468
Car20g00185 797 ProSiteProfiles Protein kinase domain profile. 541 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car20g00185 797 MobiDBLite consensus disorder prediction 365 431 - -
Car20g00185 797 Gene3D Phosphorylase Kinase; domain 1 534 619 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00070 Car20g00185 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car20g00185 Car-Chr20:1028580 Car09g00284 Car-Chr9:1532056 4.10E-79 dispersed
Car02g00070 Car-Chr2:453277 Car20g00185 Car-Chr20:1028580 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89594 PF07714 PK_Tyr_Ser-Thr 1.40E-58 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00185 - - csv:101220859 1442.94