Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00205 ATGAAATTCGAAGAGCAGAACCTGAAGCATCAGTCTGAACAGAGGTGCAGGAATATTGAGTTCGATACAATCGATCACCATCGCAGTATTTCGTCGCTGGTTGAATGCGAAGACTGCGAGAGGGATGGTGACGGCCTCTATATCCCTCCTCTCAACTTTTCCATGGTTGATAATGGCATTTTCCGCTCCGGCTTCCCTGACTCTGCTAACTTCTCCTTCCTCCAAACCCTAGGTCTCCGTTCCATTATTATCTATGTTTTGACTTTGTGTGATGAACGGATTGATGATTTTGCATCGACTTATGGATGCAGATGTTTATGTCCGGAGCCGTATCCGGAACACAACATGGAGTTCCTCAAGTCGAACGGGATTAGATTGTATCAATTTGGAATTGAAAGCTATAAGGAGCCATTCGTGAACATTCCGGATGATATGATTCGTGAAGCACTAAAAGTTGTCCTTGACGATAGGAATCACCCAGTTCTCATACATTGCAAAAGAGGAAAGCATCGAACAGGTTGTCTTGTGGGATGCCTTAGAAAATTGCAGAGGTGGTGCCTCACTTCTGTGTTTGATGAGTACCAGAGATTTGCAGCTGCAAAAGCAAGAATTTCAGACCAGAGGTTTATGGAGCTGTTTGATATCTCTGACTTTAAGCATCATCCCATGTTATTCTCATGCTCAAAGAGGTGA 693 43.87 MKFEEQNLKHQSEQRCRNIEFDTIDHHRSISSLVECEDCERDGDGLYIPPLNFSMVDNGIFRSGFPDSANFSFLQTLGLRSIIIYVLTLCDERIDDFASTYGCRCLCPEPYPEHNMEFLKSNGIRLYQFGIESYKEPFVNIPDDMIREALKVVLDDRNHPVLIHCKRGKHRTGCLVGCLRKLQRWCLTSVFDEYQRFAAAKARISDQRFMELFDISDFKHHPMLFSCSKR 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1163440 1165883 - Carg27623-RA Car20g00205 168064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00205 230 Pfam Tyrosine phosphatase family 106 221 IPR004861 -
Car20g00205 230 Pfam Tyrosine phosphatase family 47 84 IPR004861 -
Car20g00205 230 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 136 176 IPR000387 GO:0016311|GO:0016791
Car20g00205 230 ProSitePatterns Tyrosine specific protein phosphatases active site. 163 173 IPR016130 GO:0016311|GO:0016791
Car20g00205 230 ProSiteProfiles Dual specificity protein phosphatase domain profile. 52 224 IPR020422 GO:0006470|GO:0008138
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g01620 Car20g00205 CCT
Car02g00052 Car20g00205 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01620 Car-Chr11:12839350 Car20g00205 Car-Chr20:1163440 5.91E-102 wgd
Car19g00825 Car-Chr19:8790672 Car20g00205 Car-Chr20:1163440 4.63E-98 wgd
Car02g00052 Car-Chr2:359848 Car20g00205 Car-Chr20:1163440 4.27E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00205 K18045 - csv:101222170 355.91