Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00207 ATGCGGCGAGGCAGACCCTCAGATCCATTTACAGCTACAGAACTACCAAAATTGACAGTTCATCCTGAAAATCCTGTCAAAGAGATACGATACAGAGGCGTTCGGAAGCGTCCTTGGGGCAGATACGCCGCTGAGATCAGAGATCCCTGGAAGAAAACTAGGGTTTGGCTCGGTACCTTTGATTCAGCTGAAGAGGCTGCTCGGGCCTACGATAATGCTGCTCGGACCCTCCGTGGAGCCAAGGCCAAAACTAACTTCCCTCTACATCCATCCACGATTTCCATTCAACAACAAATTCCGTTCTACCAATCGCCGCCAGATTTGCACGATTCGAACGGTTATGGTGCCAAGATTGAGTGTGTTCAGGCTAATAGGCCTACGTCGAGCAGTTTGAGTTCCACCGTGGAGTCGTTTAGTGGACCGCGGATTTCTAACCCTTTGTCGTCGCTGTCTATGGTTCGCCGGAGGCCGGTGCAGCCAGTTTCGCCGGACGACTGCCATAGCGACTGTGATTCGTCCTCCTCGGTTGTTGATGATGATGAGGTCTGTGTGCTCGCTTCTTTCCGTCGAGCCTTGCCCTTCGATCTTAACTTACCGCCTCCCATGGACGTCGTGGATTTAACAGGTGACGATCTTCAAGCTACTGCTTTATGCCTCTGA 660 51.82 MRRGRPSDPFTATELPKLTVHPENPVKEIRYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDSAEEAARAYDNAARTLRGAKAKTNFPLHPSTISIQQQIPFYQSPPDLHDSNGYGAKIECVQANRPTSSSLSSTVESFSGPRISNPLSSLSMVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDDLQATALCL 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1191194 1191853 + Carg03460-RA Car20g00207 168066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00207 219 Coils Coil 63 83 - -
Car20g00207 219 CDD AP2 30 87 IPR001471 GO:0003700|GO:0006355
Car20g00207 219 Gene3D AP2/ERF domain 29 89 IPR036955 GO:0003700|GO:0006355
Car20g00207 219 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Car20g00207 219 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Car20g00207 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 25 194 - -
Car20g00207 219 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 25 194 - -
Car20g00207 219 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Car20g00207 219 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Car20g00207 219 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Car20g00207 219 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car19g00789 Car20g00207 CCT
Car19g00789 Car20g00207 ECH
Car02g00048 Car20g00207 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00732 Car-Chr6:4705517 Car20g00207 Car-Chr20:1191194 3.24E-48 dispersed
Car09g00759 Car-Chr9:4487603 Car20g00207 Car-Chr20:1191194 8.42E-34 dispersed
Car11g01596 Car-Chr11:12622845 Car20g00207 Car-Chr20:1191194 3.75E-33 dispersed
Car13g00514 Car-Chr13:7219451 Car20g00207 Car-Chr20:1191194 1.14E-32 dispersed
Car16g00883 Car-Chr16:6806077 Car20g00207 Car-Chr20:1191194 5.01E-49 dispersed
Car18g00363 Car-Chr18:2243213 Car20g00207 Car-Chr20:1191194 3.52E-32 dispersed
Car19g00789 Car-Chr19:8566593 Car20g00207 Car-Chr20:1191194 1.15E-33 dispersed
Car11g01622 Car-Chr11:12854900 Car20g00207 Car-Chr20:1191194 5.26E-77 wgd
Car19g00827 Car-Chr19:8807044 Car20g00207 Car-Chr20:1191194 3.16E-75 wgd
Car02g00048 Car-Chr2:344071 Car20g00207 Car-Chr20:1191194 4.35E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5337 PF00847 AP2 4.20E-14 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00207 K09286 - csv:101221703 400.593