Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car20g00218 | ATGGATGGTAGTGTACGAGCTCGTTTCCCACTCGGCAAACAGTCATCGCTCAAGCCGGAACGTGAAGATTCGGCTGTGGTTACCGATGAGCTTGATGATTCGATCGTGATTGACCCTGGGATTAAGCTTATGTACCTGGCGAATGATGGCGATTCGGATGGGATTAGGGAGCTACTGGATTCGGGTACCGACGTGAATTTTCACGACACTGATGGCCGAACCTCTTTGCATGTTGCTAGTTGTCAGGGCAGGCTGGACGTCGTTGAGTTGCTACTCGAACGTGGTGCAGACGTTGACGTTCAGGACCGATGGGGCAGCACGCCTCTTGCAGATGCCATATATTACAAGAATCATGATGTGATCAAACTCTTAGAAAAACATGGTGCAAAGCTACCGATGGCGCCAATGGTAGTGCAAAATGCTCTTGAAGTTCCGGAATATGAGATCGATCCAAATGAACTTGATTTTTCTAAGAGTGTGAACATTACAAAAGGAACTTTCTGCAGTGCTTCTTGGCGTGGAATTGAAGTTGCCGTGAAGACACTAGGCAAGGATGTTTTCTCCGACGAGGATAAAGTGAAGGCATTTAGGGATGAACTTGCTTTACTACAGAAGATACGGCATCCTAATGTTGTGCAATTCCTGGGAGCTGTAACACAAAGTAGTCCAATGATGATTGTCACAGAGTATTTGCCCCAGGGGGACCTTCATGCATTCTTGGAGTGTAAAGGTTCCTTGAAGCTACCAACAGTTGTAAAGTTTGCTCTTGACATTGCAAGAAACATACTGCGGGATGATTCTGGGCACCTGAAAGTTGCAGACTTTGGAGTTAGCAAACTTCTAAAATTTTCTAATAGAGTTAAAGAAGACAGACCTGTGGCTGCGACATGTCAGGAGACTTCATGGAAATATGCTGCACCTGAGGTTTATAAAAATGAAGAATATGATACGAAAGTGGATGTGTTTTCATTTGCTTTGATATTGCAAGAGATGATAGAAGGCAATCCACCTTTTTCAACAAAGCCAGAAAATGAAGTACCCAAAGCTTATGTAGCTAATGAACGGCCACCATTTACGGCTCCACCTAAGCGTTATCGGCATGGAATACAGGAACTAATCCAGGAATGTTGGGATGAGAAGCCACATAAAAGACCCACGTTTCGGCAAATAATCGAAAGGTTGGAGGATATTAACACTAAACTTATGCAAACAAGAAGCTTGAAGGTGAATCCATTCTGCAATTGTTTCCGGAACCTGAAAGCCTTATTTACAAGTGAAAGGACTAATCCAGGCAGCAGATCTTCTTACTCGGAAGCCAAATGA | 1323 | 44.07 | MDGSVRARFPLGKQSSLKPEREDSAVVTDELDDSIVIDPGIKLMYLANDGDSDGIRELLDSGTDVNFHDTDGRTSLHVASCQGRLDVVELLLERGADVDVQDRWGSTPLADAIYYKNHDVIKLLEKHGAKLPMAPMVVQNALEVPEYEIDPNELDFSKSVNITKGTFCSASWRGIEVAVKTLGKDVFSDEDKVKAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPQGDLHAFLECKGSLKLPTVVKFALDIARNILRDDSGHLKVADFGVSKLLKFSNRVKEDRPVAATCQETSWKYAAPEVYKNEEYDTKVDVFSFALILQEMIEGNPPFSTKPENEVPKAYVANERPPFTAPPKRYRHGIQELIQECWDEKPHKRPTFRQIIERLEDINTKLMQTRSLKVNPFCNCFRNLKALFTSERTNPGSRSSYSEAK | 440 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 1256883 | 1264941 | + | Carg03449-RA | Car20g00218 | 168077 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car20g00218 | 440 | ProSiteProfiles | Ankyrin repeat region circular profile. | 71 | 103 | - | - | |
Car20g00218 | 440 | ProSiteProfiles | Protein kinase domain profile. | 156 | 401 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Car20g00218 | 440 | Pfam | Ankyrin repeats (3 copies) | 43 | 131 | IPR002110 | GO:0005515 | |
Car20g00218 | 440 | ProSiteProfiles | Ankyrin repeat profile. | 71 | 103 | IPR002110 | GO:0005515 | |
Car20g00218 | 440 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Car20g00218 | 440 | Pfam | Protein tyrosine and serine/threonine kinase | 259 | 394 | IPR001245 | GO:0004672|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car03g01214 | Car-Chr3:9473607 | Car20g00218 | Car-Chr20:1256883 | 2.85E-75 | dispersed | |
Car11g00638 | Car-Chr11:3512697 | Car20g00218 | Car-Chr20:1256883 | 1.36E-09 | dispersed | |
Car18g00413 | Car-Chr18:2588834 | Car20g00218 | Car-Chr20:1256883 | 0 | dispersed | |
Car18g01039 | Car-Chr18:10720494 | Car20g00218 | Car-Chr20:1256883 | 1.71E-69 | dispersed | |
Car19g00236 | Car-Chr19:2383166 | Car20g00218 | Car-Chr20:1256883 | 3.16E-89 | dispersed | |
Car02g00035 | Car-Chr2:281957 | Car20g00218 | Car-Chr20:1256883 | 6.27E-167 | transposed | |
Car11g01213 | Car-Chr11:9864531 | Car20g00218 | Car-Chr20:1256883 | 2.73E-80 | transposed | |
Car20g00860 | Car-Chr20:7616022 | Car20g00218 | Car-Chr20:1256883 | 1.81E-06 | transposed | |
Car02g00034 | Car-Chr2:280441 | Car20g00218 | Car-Chr20:1256883 | 8.53E-91 | wgd | |
Car20g00218 | Car-Chr20:1256883 | Car03g01213 | Car-Chr3:9472113 | 6.62E-80 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
89595 | PF07714 | PK_Tyr_Ser-Thr | 9.40E-24 | CL0016 | Car | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car20g00218 | - | - | cpep:111777411 | 870.537 |