Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00220 CATACCCTTCACCAAAATCTGATCCCCCTTTTCTGTTGGTGTTCTTCCCTCAAAGTTGAGCTCACCCAGATTTCAGCCACGGAGTTCCCAAGCCAAGCTGGAGAAGGATCTGCCTCTTCCCACAAAAAAATGGGAAGAGCCTACGAGTTGTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATCGTCTTCTCCACTCGTGGCCGTCTCTATGAATATGCCAATAACAGTGTTAGAGGAACCATTGAAAGGTACAAGAAAGCATTTGCTGACTCTTCCAATTCTGGATTATCAGTGGCAGAAGCTAATGTACAGTTTTACCAGCAAGAAGCATCGAAGCTGAAGAGACAGATCCGGGAGATTCAAAACTCGAACAGGCATATTCTTGGTGAAGCACTCAGCTCATTGTCTTTAAAGGACCTGAAAAGCTTGGAGGGCAGATTGGAGAGAGGAATCAGCAAAGTTAGGGCTAAAAAGGAAATGGAGCTTCAGAATCACAACAACTATCTTCGAGCACAGATTGCTGAACACGAAAGAATACAACAACAGCAACAACAGCAACAAACGAACATGATGCAAAGGGGAACGTATGAGACAGTGGGAGGAGGGCAGTACGAGGAGAACAGAAGCTATGGCGGCGTGGGGCTTATGGATTCGGACACCCATTACGCCCATCAAGACCATCTCACTGCCCTTCAGCTCGTTTAA 705 46.52 HTLHQNLIPLFCWCSSLKVELTQISATEFPSQAGEGSASSHKKMGRAYELSVLCDAEVALIVFSTRGRLYEYANNSVRGTIERYKKAFADSSNSGLSVAEANVQFYQQEASKLKRQIREIQNSNRHILGEALSSLSLKDLKSLEGRLERGISKVRAKKEMELQNHNNYLRAQIAEHERIQQQQQQQQTNMMQRGTYETVGGGQYEENRSYGGVGLMDSDTHYAHQDHLTALQLV 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1276126 1279498 + Carg03446-RA Car20g00220 168079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00220 234 ProSiteProfiles K-box domain profile. 103 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car20g00220 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 46 72 IPR002100 GO:0003677|GO:0046983
Car20g00220 234 Coils Coil 96 123 - -
Car20g00220 234 ProSiteProfiles MADS-box domain profile. 44 76 IPR002100 GO:0003677|GO:0046983
Car20g00220 234 Pfam K-box region 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00131 Car-Chr7:809346 Car20g00220 Car-Chr20:1276126 2.43E-63 dispersed
Car20g00220 Car-Chr20:1276126 Car04g00386 Car-Chr4:2188168 2.15E-28 dispersed
Car13g00458 Car-Chr13:6936586 Car20g00220 Car-Chr20:1276126 1.17E-55 wgd
Car20g00220 Car-Chr20:1276126 Car03g01215 Car-Chr3:9481463 8.73E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5338 PF01486 K-box 2.80E-18 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00220 K09264 - csv:101217987 303.523